View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17939_low_11 (Length: 242)
Name: NF17939_low_11
Description: NF17939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17939_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 27762294 - 27762066
Alignment:
| Q |
1 |
ccctatgatttgacaatggtaacaaaaatcagggagcctatcataacgaacttttacacataaagcattaccttccctctaaactgggatttcataaaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
27762294 |
ccctatgatttgacaatggtaacaaaaatcagggagcatatcataacgaacttttacacataaagcattaccttccctctagacccggatttcataaaaa |
27762195 |
T |
|
| Q |
101 |
attcgtttcgacaaatccatatcaaccagaatcctcccatagggaccaaaggccctattttaagttggaccatccaaagttaatggtatcccaacaacac |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27762194 |
tttcgtttcgacaaatccatatcaaccagaatcctcccatagggaccaaaggccctattttaagttggaccatccaaagttaatggtatcccaacaacac |
27762095 |
T |
|
| Q |
201 |
tagctatttcaaaattttctttccaatat |
229 |
Q |
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| ||||||||||||||||||||||||||| |
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| T |
27762094 |
tggctatttcaaaattttctttccaatat |
27762066 |
T |
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