View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17939_low_14 (Length: 235)

Name: NF17939_low_14
Description: NF17939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17939_low_14
NF17939_low_14
[»] chr2 (3 HSPs)
chr2 (1-112)||(30848051-30848162)
chr2 (1-112)||(1902031-1902142)
chr2 (1-108)||(26501458-26501565)
[»] chr7 (3 HSPs)
chr7 (1-112)||(13638641-13638752)
chr7 (4-112)||(29961763-29961871)
chr7 (1-112)||(8862474-8862585)
[»] chr8 (2 HSPs)
chr8 (1-112)||(12642992-12643103)
chr8 (1-112)||(13811804-13811915)
[»] chr3 (1 HSPs)
chr3 (1-112)||(4480056-4480167)
[»] chr1 (1 HSPs)
chr1 (1-112)||(45600711-45600820)
[»] chr4 (1 HSPs)
chr4 (5-112)||(15543603-15543710)
[»] chr6 (1 HSPs)
chr6 (42-111)||(6231249-6231318)


Alignment Details
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 30848162 - 30848051
Alignment:
Q  1 attgccaaattctgtgatatctgtcatatgggagtgaaaaacatctctcgttattttagaatcaaactcgaaatctatgttgtcgaattgcatgtcttac 100  Q
    |||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  30848162 attgccaaattctgtgatatctgtcatacgggagtggaaagcatctctcgttattttagaatcaagctcaaaatctatgttgtcgaattgcatgtcttac 30848063  T
Q  101 atccattgaatg 112  Q
    ||||||||||||    
T  30848062 atccattgaatg 30848051  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 1902142 - 1902031
Alignment:
Q  1 attgccaaattctgtgatatctgtcatatgggagtgaaaaacatctctcgttattttagaatcaaactcgaaatctatgttgtcgaattgcatgtcttac 100  Q
    |||||||||||||||||||| |||||||  |||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  1902142 attgccaaattctgtgatatatgtcatacaggagtggaaagcatctctcgttattttagaatcaagctcgaaatctatgttgtcgaattgcatgtcttgc 1902043  T
Q  101 atccattgaatg 112  Q
    ||| ||||||||    
T  1902042 atctattgaatg 1902031  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 26501458 - 26501565
Alignment:
Q  1 attgccaaattctgtgatatctgtcatatgggagtgaaaaacatctctcgttattttagaatcaaactcgaaatctatgttgtcgaattgcatgtcttac 100  Q
    ||||||||||||||| | |||||||  | ||||||| ||| |||| ||| ||||||||||||| | || ||| ||||  ||||||||||||||||||| |    
T  26501458 attgccaaattctgtaacatctgtctcaagggagtggaaagcatccctctttattttagaatctagcttgaagtctacattgtcgaattgcatgtcttgc 26501557  T
Q  101 atccattg 108  Q
    ||||||||    
T  26501558 atccattg 26501565  T

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Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 13638641 - 13638752
Alignment:
Q  1 attgccaaattctgtgatatctgtcatatgggagtgaaaaacatctctcgttattttagaatcaaactcgaaatctatgttgtcgaattgcatgtcttac 100  Q
    ||||||||||| ||||||||||||||||  |||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  13638641 attgccaaattttgtgatatctgtcataatggagtggaaagcatctctcgttattttagaatcaagctcgaaatctatgttgtcgaattgcatgtcttgc 13638740  T
Q  101 atccattgaatg 112  Q
    ||||||||||||    
T  13638741 atccattgaatg 13638752  T

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Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 29961871 - 29961763
Alignment:
Q  4 gccaaattctgtgatatctgtcatatgggagtgaaaaacatctctcgttattttagaatcaaactcgaaatctatgttgtcgaattgcatgtcttacatc 103  Q
    ||||||||||||||||||||||||| ||||||| ||| |||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||| ||||    
T  29961871 gccaaattctgtgatatctgtcatacgggagtggaaaccatctctcattattttcgaatcaagctcgaaatctatgttgtcgaattgcatgtcttgcatc 29961772  T
Q  104 cattgaatg 112  Q
    |||||||||    
T  29961771 cattgaatg 29961763  T

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Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 8862474 - 8862585
Alignment:
Q  1 attgccaaattctgtgatatctgtcatatgggagtgaaaaacatctctcgttattttagaatcaaactcgaaatctatgttgtcgaattgcatgtcttac 100  Q
    ||||||||||| |||||||||||||||| ||||||| ||| |||||||||||||||||||||||| || |||||||| |||||||||||||||||||| |    
T  8862474 attgccaaattttgtgatatctgtcatacgggagtggaaagcatctctcgttattttagaatcaagcttgaaatctaggttgtcgaattgcatgtcttgc 8862573  T
Q  101 atccattgaatg 112  Q
    ||||||||||||    
T  8862574 atccattgaatg 8862585  T

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Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 12643103 - 12642992
Alignment:
Q  1 attgccaaattctgtgatatctgtcatatgggagtgaaaaacatctctcgttattttagaatcaaactcgaaatctatgttgtcgaattgcatgtcttac 100  Q
    |||||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||||||||||| || ||||||||||||||| ||||||||||||| |    
T  12643103 attgccaaattctgtgatatctgtcatacgggagtggaaagcatctctggttattttagaatcaagcttgaaatctatgttgtcaaattgcatgtcttgc 12643004  T
Q  101 atccattgaatg 112  Q
    ||||||||||||    
T  12643003 atccattgaatg 12642992  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 13811804 - 13811915
Alignment:
Q  1 attgccaaattctgtgatatctgtcatatgggagtgaaaaacatctctcgttattttagaatcaaactcgaaatctatgttgtcgaattgcatgtcttac 100  Q
    ||||||||| ||| | | ||||||| || ||||||| ||| |||| ||||| || |||||||| | ||| ||||| |  |||||||| |||||||||| |    
T  13811804 attgccaaactctataacatctgtcttacgggagtggaaagcatccctcgtaatcttagaatctagctcaaaatccacattgtcgaaatgcatgtcttgc 13811903  T
Q  101 atccattgaatg 112  Q
    ||||||||||||    
T  13811904 atccattgaatg 13811915  T

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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 4480056 - 4480167
Alignment:
Q  1 attgccaaattctgtgatatctgtcatatgggagtgaaaaacatctctcgttattttagaatcaaactcgaaatctatgttgtcgaattgcatgtcttac 100  Q
    |||||||||||||||||||||| ||||| ||||||| ||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  4480056 attgccaaattctgtgatatctatcatacgggagtggaaagcatctctcattattttagaatcaagctcgaaatctatgttgtcgaattgcatgtcttgc 4480155  T
Q  101 atccattgaatg 112  Q
    |||| |||||||    
T  4480156 atccgttgaatg 4480167  T

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Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 45600820 - 45600711
Alignment:
Q  1 attgccaaattctgtgatatctgtcatatgggagtgaaaaacatctctcgttattttagaatcaaactcgaaatctatgttgtcgaattgcatgtcttac 100  Q
    ||||||||||| |||||||| ||||||| ||||||| ||| |||||||||||||||||||||||| |||||||||||||||||  |||| |||||||| |    
T  45600820 attgccaaattttgtgatatttgtcatacgggagtggaaagcatctctcgttattttagaatcaagctcgaaatctatgttgt--aattacatgtcttgc 45600723  T
Q  101 atccattgaatg 112  Q
    ||||||||||||    
T  45600722 atccattgaatg 45600711  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 15543603 - 15543710
Alignment:
Q  5 ccaaattctgtgatatctgtcatatgggagtgaaaaacatctctcgttattttagaatcaaactcgaaatctatgttgtcgaattgcatgtcttacatcc 104  Q
    ||||||||||| | || |||| |  |||| || ||| |||||||||||||||| ||||||| |||||| ||| |||||| |||||||||||||| | |||    
T  15543603 ccaaattctgtaacatttgtcgtgcgggaatggaaagcatctctcgttatttttgaatcaagctcgaagtctgtgttgttgaattgcatgtcttgcttcc 15543702  T
Q  105 attgaatg 112  Q
    ||||||||    
T  15543703 attgaatg 15543710  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 6231318 - 6231249
Alignment:
Q  42 catctctcgttattttagaatcaaactcgaaatctatgttgtcgaattgcatgtcttacatccattgaat 111  Q
    |||||||||||||||||||||||| |||||| ||||| ||||| || ||||| |||| || |||||||||    
T  6231318 catctctcgttattttagaatcaagctcgaagtctatattgtcaaaatgcatatcttgcaaccattgaat 6231249  T

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