View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17939_low_2 (Length: 551)
Name: NF17939_low_2
Description: NF17939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17939_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 15 - 468
Target Start/End: Original strand, 2223448 - 2223882
Alignment:
| Q |
15 |
catagggtgatggttaattaatggtgactcatgagatataaagaaacttacaattaagcaaactaaacatgtacacttaattctcataaagaaaatatgt |
114 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2223448 |
cataaggtgatggttaattaatggtgactcatgagatataaagaaacttacaattaagcaa-ctaaacatgtacacttaattctcataaagaaaatatgt |
2223546 |
T |
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| Q |
115 |
acaccgaattggttaattagtttagttagtcatatatcatacatgtatatatgcatattgcttatctaacaagtaattaactagaataatagtttgnnnn |
214 |
Q |
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| T |
2223547 |
acaccgaattggttaattagtttagttagtcatatatcatacatgtatatatgcatattgcttatctaacaagtaattaaatagaataatggtttgtttt |
2223646 |
T |
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| Q |
215 |
nnnnnnaattaagaagcaaaatacatttatggtatttgaactgcttttggtaccatatcaaacactttgttttggctgaattattattatttaatgatga |
314 |
Q |
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| T |
2223647 |
ttttttaattaagaagcaaaatacatttatggtatttgaactgcttttggtaccatatccaacaatt-----------aattattattatttaatgatga |
2223735 |
T |
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| Q |
315 |
tcgatcagccagatcttccggatgaaagagaaaggattgaagcagcaggtggaagagtgattgattggaatgggaatcgtgttttaggagtactcgcaac |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2223736 |
tcgatcagccagatcttccggatgaaagagaaaggattgaagcagcaggtggaagagtgattgattggaatgggaatcgtgttttaggagtactcgcaac |
2223835 |
T |
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| Q |
415 |
ttccagatcaataggtacgtacgtacttataataaaataatgatatacatgcat |
468 |
Q |
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| T |
2223836 |
ttccagatcaatag----gtacgtacttataataa---aatgatatacatgcat |
2223882 |
T |
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