View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17939_low_5 (Length: 391)

Name: NF17939_low_5
Description: NF17939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17939_low_5
NF17939_low_5
[»] chr6 (1 HSPs)
chr6 (99-167)||(7600006-7600074)
[»] chr5 (2 HSPs)
chr5 (99-167)||(19611252-19611320)
chr5 (347-378)||(31778504-31778535)
[»] chr4 (3 HSPs)
chr4 (99-167)||(28462449-28462517)
chr4 (20-57)||(46632290-46632327)
chr4 (99-167)||(54188534-54188602)
[»] chr3 (1 HSPs)
chr3 (99-167)||(23361691-23361759)
[»] chr2 (1 HSPs)
chr2 (99-167)||(45402104-45402172)
[»] chr7 (2 HSPs)
chr7 (99-167)||(3367622-3367690)
chr7 (115-167)||(7710919-7710971)
[»] chr8 (1 HSPs)
chr8 (112-160)||(23241019-23241067)


Alignment Details
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 7600074 - 7600006
Alignment:
Q  99 attgcaaaacagggtcaaatttcattgagacaaataatgaaacgcctcatatgcaacacaataatacct 167  Q
    ||||||||||||| ||||||||||||||||||| | || |||| |||| ||||||||||||||||||||    
T  7600074 attgcaaaacaggttcaaatttcattgagacaatttatcaaacacctcctatgcaacacaataatacct 7600006  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 19611320 - 19611252
Alignment:
Q  99 attgcaaaacagggtcaaatttcattgagacaaataatgaaacgcctcatatgcaacacaataatacct 167  Q
    ||||||||||||| ||||||||||||||||||| | || |||| |||| ||||||||||||||||||||    
T  19611320 attgcaaaacaggttcaaatttcattgagacaatttatcaaacacctcctatgcaacacaataatacct 19611252  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 347 - 378
Target Start/End: Complemental strand, 31778535 - 31778504
Alignment:
Q  347 ttcagaaatactgcaaaagcttaaatccagaa 378  Q
    ||||||||||||||||||||||||||||||||    
T  31778535 ttcagaaatactgcaaaagcttaaatccagaa 31778504  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 28462449 - 28462517
Alignment:
Q  99 attgcaaaacagggtcaaatttcattgagacaaataatgaaacgcctcatatgcaacacaataatacct 167  Q
    ||||||||||||| ||||||||||||||||||| | || |||| |||| ||||||||||||||||||||    
T  28462449 attgcaaaacaggttcaaatttcattgagacaatttatcaaacacctcctatgcaacacaataatacct 28462517  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 46632290 - 46632327
Alignment:
Q  20 ttagctaccaaaggtccaaaacactatatcacatataa 57  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46632290 ttagctaccaaaggtccaaaacactatatcacatataa 46632327  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 54188534 - 54188602
Alignment:
Q  99 attgcaaaacagggtcaaatttcattgagacaaataatgaaacgcctcatatgcaacacaataatacct 167  Q
    |||||||||||  |||||||||||||||| ||||| ||  ||| ||| ||| ||| |||||||||||||    
T  54188534 attgcaaaacacagtcaaatttcattgagtcaaattatcgaacacctgataggcagcacaataatacct 54188602  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 23361759 - 23361691
Alignment:
Q  99 attgcaaaacagggtcaaatttcattgagacaaataatgaaacgcctcatatgcaacacaataatacct 167  Q
    ||||||||||||| ||||||||||||||||||| | || |||| |||| ||||||||||||||||||||    
T  23361759 attgcaaaacaggttcaaatttcattgagacaatttatcaaacacctcctatgcaacacaataatacct 23361691  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 45402172 - 45402104
Alignment:
Q  99 attgcaaaacagggtcaaatttcattgagacaaataatgaaacgcctcatatgcaacacaataatacct 167  Q
    ||||||||||||| ||||||||||||||||||| | || |||| |||| ||||||||||||||||||||    
T  45402172 attgcaaaacaggttcaaatttcattgagacaatttatcaaacacctcctatgcaacacaataatacct 45402104  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 3367622 - 3367690
Alignment:
Q  99 attgcaaaacagggtcaaatttcattgagacaaataatgaaacgcctcatatgcaacacaataatacct 167  Q
    |||||||||||  |||||||||||||||| ||||| || |||| ||| ||| ||| |||||||||||||    
T  3367622 attgcaaaacacagtcaaatttcattgagtcaaattatcaaacacctgataggcagcacaataatacct 3367690  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 7710971 - 7710919
Alignment:
Q  115 aaatttcattgagacaaataatgaaacgcctcatatgcaacacaataatacct 167  Q
    ||||||||||||| ||||| || |||| |||||||||||||||||| ||||||    
T  7710971 aaatttcattgagtcaaattatcaaacacctcatatgcaacacaatcatacct 7710919  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 23241067 - 23241019
Alignment:
Q  112 gtcaaatttcattgagacaaataatgaaacgcctcatatgcaacacaat 160  Q
    |||||||||||||||| ||||| || |||| | ||||||||||||||||    
T  23241067 gtcaaatttcattgagtcaaattatcaaacacttcatatgcaacacaat 23241019  T

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