View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17939_low_6 (Length: 388)
Name: NF17939_low_6
Description: NF17939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17939_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 37943259 - 37942907
Alignment:
| Q |
18 |
caaagctaccatatttttaaatcaccgccattgttagatactacctcgtttcccaagnnnnnnnataatatttctccaccaatttgagcatcttccatcg |
117 |
Q |
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| T |
37943259 |
caaagctaccatatttttaaatcaccaccattgttagatactacctcgtttcccaagttt----ataatatttctccaccaatttgagcatcttccatcg |
37943164 |
T |
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| Q |
118 |
gtgaaagattgttttgtaaacatggagcatttttctattttaccaaatttctactttaattatttttctccacaaccccctccttctcaaatagacatat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||| |||| ||||| |
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| T |
37943163 |
gtgaaagattgttttgtaaacatggagcatttttctattttacctaacttctactttaagtatttttctccacaaccccctccttctctaatatccatat |
37943064 |
T |
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| Q |
218 |
ccatatccattacgtaagcattaaccaacactacattaaacaacttcaacacttttctcggtgctttctaaaagaagaaattaagtggtcgaaagcaacg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37943063 |
ccatatccattacgtaagcattaaccaacactacattaaacaacttcaacacttttctcggtgctttctaaaagaagaaattaagtggttgaaagcaacg |
37942964 |
T |
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| Q |
318 |
atacttaagcttggtagacatgatcactatctcaaagtatgcctccaactctattat |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37942963 |
atacttaagcttggtagacatgatcactatctcaaagtatgcctccaactctattat |
37942907 |
T |
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