View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17939_low_7 (Length: 353)
Name: NF17939_low_7
Description: NF17939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17939_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 37342195 - 37341870
Alignment:
| Q |
11 |
cacagaccgcgtattgttaaactttgtggaagccctgtcctgcaattggatggtgacctacaataggttattggccattgtagagctaggacaagaaaat |
110 |
Q |
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| T |
37342195 |
cacagaccgcgtattgttaaactttgtggaagccctgtcctgcaattggatggtggcctacaataggttattggccattgtagagctaggacaagaaaat |
37342096 |
T |
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| Q |
111 |
cgtatgacattaccgtaggtaagaagaaaaataaacatatcaagaaaactagacgtgccattgtaggaaggtgcaaattttctattgcgaatgaacttgt |
210 |
Q |
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| T |
37342095 |
cgcatgacattaccgtaggtaagaagaaaaataaacatatcaagaaaactagacgtgccattgtaggaaggtgcaaattttctattgcgaatgagtttgt |
37341996 |
T |
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| Q |
211 |
tgtttgtgaaattggtttttgtatatacagctgtataaatctataatgtgatatcctcttgttctcccctctccttagtctggccattaatgcaattatt |
310 |
Q |
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| T |
37341995 |
tgtttgtgaaattggtttttgtatatatagctgtataaatctataatgtgataccctcttgttctcccctctccttagtcttgccattaatgcaattatt |
37341896 |
T |
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| Q |
311 |
atatcaataattctcctaactaaaaa |
336 |
Q |
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|||||||||||||||||||||||||| |
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| T |
37341895 |
atatcaataattctcctaactaaaaa |
37341870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 37334788 - 37334833
Alignment:
| Q |
19 |
gcgtattgttaaactttgtggaagccctgtcctgcaattggatggt |
64 |
Q |
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| T |
37334788 |
gcgtattgttaaacttaatggaagccatgtcctgcaattggatggt |
37334833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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