View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1793_low_1 (Length: 606)
Name: NF1793_low_1
Description: NF1793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1793_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 11 - 596
Target Start/End: Original strand, 37315975 - 37316560
Alignment:
| Q |
11 |
cataggggcaagagttagaccataaacnnnnnnncttcccattttgtccccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaaca |
110 |
Q |
| |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37315975 |
cataagggcaagagttagaccataaactttttttcttcccattttgtccccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaaca |
37316074 |
T |
|
| Q |
111 |
ccatttactgctgctgatacatttggaggcaaagttccaggcttgagtgcacctgggtgtgtgtaatatattcttccaagtaacttggtaacatttggta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37316075 |
ccatttactgctgctgatacatttggaggcaaagttccaggcttgagtgcacctgggtgtgtgtaatatattcttccaagtaacttggtaacatttggta |
37316174 |
T |
|
| Q |
211 |
tgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatcaagggcagttag |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37316175 |
tgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatcaagggcagttag |
37316274 |
T |
|
| Q |
311 |
aactcctagttgttcacgagccatggatagatttttaaggtagagtgaccaattgagtctttggtaatagtgtgctccaaagaccaattagtggtgacta |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37316275 |
aactcctagttgttcacgagccatggatagatttttaaggtagagtgaccaattgagtctttggtaatagtgtgctccaaagaccaattagtggtgacta |
37316374 |
T |
|
| Q |
411 |
taattctggcagaagaaggaataacaagttagtattatataggtgtttcagtaccacgctatcaagtgactttttgttgaagtttactaaaatcacaaac |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37316375 |
taattctggcagaagaaggaataacaagttagtattatataggtgtttcagtgccacgctatcaagtgactttttgttgaagtttactaaaatcacaaac |
37316474 |
T |
|
| Q |
511 |
tcatgaataaacgctataagttagttagtgggaaaagccctattcgctagaaccattttggacttgtcaaagccctcgtgtctgtg |
596 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
37316475 |
tcatgaataaacgctataagttagttagttggaaaagccctattcgctagaaccattttggacttgtcaaagccctcatgtgtgtg |
37316560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 138 - 431
Target Start/End: Complemental strand, 19207188 - 19206901
Alignment:
| Q |
138 |
ggcaaagttccaggcttgagtgcacctgggtgtgtgtaatatattcttccaagtaacttggtaacatttggtatgcagaaaaggtcatatgcatctgtga |
237 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19207188 |
ggcaaagttccaggcttgagtgcatctgggtgtgtgtagtatattcttccaagtaacttggtaacatttggtatgcagaaaaggtcatatgcatctgtgc |
19207089 |
T |
|
| Q |
238 |
agaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatcaagggcagttagaactcctagttgttcacgagccatgga |
337 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| | ||||||||||||||| |||||| |||||| || |
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| T |
19207088 |
agaatcccataccagcaattatgatggctgtgaaaaggtaccattgtgttttggctgcatgaagagaagttagaactcctagctgttcatgagccaagg- |
19206990 |
T |
|
| Q |
338 |
tagatttttaaggtagagtgaccaattgagtctttggtaatagtgtgctccaaagaccaattagtggtgactataattctggcagaagaaggaa |
431 |
Q |
| |
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|||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| || ||||||||||||| |||||| ||||||||||| |
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| T |
19206989 |
tagattttgaaggtggagtgaccaattgagtctttggttatagtgtgctccaaacac----tagtggtgactat-gttctggtagaagaaggaa |
19206901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 213 - 310
Target Start/End: Complemental strand, 38883908 - 38883811
Alignment:
| Q |
213 |
cagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatcaagggcagttag |
310 |
Q |
| |
|
||||| || ||||| |||||||| ||||||||||||||||| || ||||| || ||||||||||||||||||||||| || ||||||| ||| |||| |
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| T |
38883908 |
cagaacagatcataggcatctgtaaagaatcccataccagctatgatgattgcagtgaaatggtaccattgtgttttagccacatcaagcgcatttag |
38883811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 310
Target Start/End: Complemental strand, 38893140 - 38893003
Alignment:
| Q |
173 |
gtaatatattcttccaagtaacttggtaacatttggtatgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaa |
272 |
Q |
| |
|
||||||||| | ||| || |||||||||||| | ||||||||| || ||||| ||||| || ||||||||||| |||||||| ||||| |||||||| |
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| T |
38893140 |
gtaatatatgcgtcccagcaacttggtaacaagggatatgcagaacagatcataggcatcagtaaagaatcccattccagcaatgatgattgctgtgaag |
38893041 |
T |
|
| Q |
273 |
tggtaccattgtgttttggctgcatcaagggcagttag |
310 |
Q |
| |
|
|| |||||||| ||||| || ||||||| ||| |||| |
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| T |
38893040 |
tgataccattgcgttttcgccacatcaagtgcatttag |
38893003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 38884061 - 38883967
Alignment:
| Q |
60 |
ccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaacaccatttactgctgctgatacatttggaggcaaagttccaggctt |
154 |
Q |
| |
|
|||||||| |||||||||||||| |||| || || ||||||| ||| |||||||| || || ||||||||||| |||||||| || || ||||| |
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| T |
38884061 |
ccaagccagccaaagaaaagttgccctgaaagtgttccacagaaagctacaccattcacagcagctgatacattgggaggcaatgtaccgggctt |
38883967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 16175294 - 16175340
Alignment:
| Q |
45 |
cttcccattttgtccccaagccaaccaaagaaaagttggcctgctag |
91 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
16175294 |
cttcccattttgtccccaagccaaccaaagaataattggcctgctag |
16175340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 33115203 - 33115133
Alignment:
| Q |
45 |
cttcccattttgtccccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaacaccatt |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||| || | |||| || |||||||||||| |
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| T |
33115203 |
cttcccattttgtcaccaagccaaccaaagaaaagttgtcctgccagtgctccactgaaagcaacaccatt |
33115133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 210 - 319
Target Start/End: Complemental strand, 16223293 - 16223184
Alignment:
| Q |
210 |
atgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatcaagggcagtta |
309 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| |||||||| | || | ||||| || ||| ||||||| ||||| ||||||| ||| ||| |
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| T |
16223293 |
atgcagaaaagatcatatgcatcagtgaagaatcccattccagcaatcacaattgtagtgaagtgatacaattgtgtcttggccacatcaagtgcattta |
16223194 |
T |
|
| Q |
310 |
gaactcctag |
319 |
Q |
| |
|
| |||||||| |
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|
| T |
16223193 |
gcactcctag |
16223184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 30620974 - 30621063
Alignment:
| Q |
209 |
tatgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatc |
298 |
Q |
| |
|
||||||||| || || |||||||| |||||||| ||||| ||||| || | || |||||||||||||||||||||||||| ||| |||| |
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|
| T |
30620974 |
tatgcagaatagatcgtatgcatcggtgaagaagcccattccagctatgacaattgctgtgaaatggtaccattgtgttttcgctacatc |
30621063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 286
Target Start/End: Original strand, 9700035 - 9700111
Alignment:
| Q |
210 |
atgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgt |
286 |
Q |
| |
|
|||||||| || ||||| ||||| |||||||||||||| |||||||||| || ||||| | ||||||||||||||| |
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|
| T |
9700035 |
atgcagaacagatcataggcatcagtgaagaatcccatgccagcaattactatagctgttacatggtaccattgtgt |
9700111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 253
Target Start/End: Complemental strand, 16183903 - 16183860
Alignment:
| Q |
210 |
atgcagaaaaggtcatatgcatctgtgaagaatcccataccagc |
253 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| ||||| |
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|
| T |
16183903 |
atgcagaaaagatcatatgcatcagtgaagaatcccattccagc |
16183860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 210 - 318
Target Start/End: Original strand, 16175459 - 16175567
Alignment:
| Q |
210 |
atgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaatggtaccattgtgttttggctgcatcaagggcagtta |
309 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| ||||| ||||| || | || | |||||||||||| ||||||| || || |||| || ||| ||| |
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| T |
16175459 |
atgcagaaaagatcataagcatcagtgaagaaacccattccagctatcacaattgtagtgaaatggtacaattgtgtctttgccacatctagtgcattta |
16175558 |
T |
|
| Q |
310 |
gaactccta |
318 |
Q |
| |
|
||||||||| |
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|
| T |
16175559 |
gaactccta |
16175567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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