View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1793_low_2 (Length: 467)

Name: NF1793_low_2
Description: NF1793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1793_low_2
NF1793_low_2
[»] chr1 (8 HSPs)
chr1 (11-406)||(11870770-11871169)
chr1 (320-404)||(25534233-25534318)
chr1 (254-393)||(10825377-10825517)
chr1 (320-393)||(15857056-15857130)
chr1 (320-404)||(27451391-27451476)
chr1 (250-297)||(9402191-9402238)
chr1 (248-295)||(21449676-21449723)
chr1 (39-149)||(14392898-14393008)
[»] chr3 (3 HSPs)
chr3 (320-404)||(25781247-25781332)
chr3 (342-394)||(25779984-25780036)
chr3 (233-293)||(30510493-30510553)
[»] chr8 (8 HSPs)
chr8 (320-392)||(12565244-12565316)
chr8 (324-396)||(24569744-24569817)
chr8 (344-403)||(31014594-31014653)
chr8 (224-397)||(12657183-12657357)
chr8 (307-404)||(28317875-28317972)
chr8 (334-404)||(25597472-25597543)
chr8 (320-405)||(28310519-28310605)
chr8 (250-297)||(17101461-17101510)
[»] chr5 (3 HSPs)
chr5 (320-397)||(18750999-18751077)
chr5 (320-396)||(8365240-8365317)
chr5 (332-404)||(19324239-19324312)
[»] chr2 (3 HSPs)
chr2 (319-397)||(36357537-36357616)
chr2 (320-404)||(27748578-27748663)
chr2 (344-397)||(31399720-31399773)
[»] chr6 (6 HSPs)
chr6 (281-397)||(9228433-9228550)
chr6 (254-297)||(14072771-14072814)
chr6 (223-404)||(20560120-20560298)
chr6 (250-293)||(34479155-34479198)
chr6 (352-404)||(15550000-15550052)
chr6 (249-293)||(26214888-26214932)
[»] chr7 (1 HSPs)
chr7 (249-293)||(4901382-4901426)
[»] scaffold0040 (1 HSPs)
scaffold0040 (253-295)||(26410-26452)
[»] scaffold1122 (1 HSPs)
scaffold1122 (345-394)||(1522-1571)


Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 406
Target Start/End: Complemental strand, 11871169 - 11870770
Alignment:
Q  11 cagagagaacaaccaccgacccaacaaagaaccacacaccgactcaccactcaagaatccacgaatcaacacaagaaaacatgaatctgaataaaaccat 110  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||    
T  11871169 cagagagaacaaccaccgacccaacaaagaaccacacactgactcaccactcaagaatccacgaaccaacacaagaaaacacaaatctgaataaaaccat 11871070  T
Q  111 cctcacagcgtcaaaacacagcgatgcaaagctggccacggcagatgaacaatgaaggtaacattccta-ggatgatgtttgaacttagaaatagagtga 209  Q
    ||||||| ||||||||||| |||| |||||||||||||||  |||||||| | |||||||||||||||| ||||||||||||||||||||||||||| ||    
T  11871069 cctcacaacgtcaaaacacggcgacgcaaagctggccacgatagatgaac-aggaaggtaacattcctagggatgatgtttgaacttagaaatagagcga 11870971  T
Q  210 cactaatgtggacgttgcatatgaatt---ttactctttttctctttgtaaggtagacgagatagggatgtccatttgtagaactactaagg-aagatga 305  Q
    ||||| ||||||| |||||||||||||   |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||| |||||||    
T  11870970 cactactgtggacattgcatatgaattttattactctttttctcttggtaatatagacgagatagggatgtccatttgtagaactactaaggtaagatga 11870871  T
Q  306 ggtatgttgatttccttctaagatttatagacgaagtggagcctttagatgacaatttagaaattccatctcttttatgtttcaattacctccgagagat 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  11870870 ggtatgttgatttccttctaagatttatagacgaagtggagcctttagatgacaatttagaaattccatctcttttatgtttcaattacctctaagagat 11870771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 320 - 404
Target Start/End: Original strand, 25534233 - 25534318
Alignment:
Q  320 cttctaagatttatagacgaagtg-gagcctttagatgacaatttagaaattccatctcttttatgtttcaattacctccgagaga 404  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||| ||| |||  |||||||||||||||||| ||| ||||||    
T  25534233 cttctaagattcatagacgaagttagagcctttagatgacaatttaggaatcccaattcttttatgtttcaattatctctgagaga 25534318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 254 - 393
Target Start/End: Complemental strand, 10825517 - 10825377
Alignment:
Q  254 gtaaggtagacgagatagggatgtccatttgtagaactactaagg-aagatgag-gtatgttgatttccttctaagatttatagacgaagtgga-gcctt 350  Q
    |||||||||| | ||||||| ||||| |||||||||||||||||| |||| ||| || |||| ||   ||||||||||| ||||||||||| || ||| |    
T  10825517 gtaaggtagatgggatagggttgtccgtttgtagaactactaaggtaaga-gagagtgtgtt-atgaacttctaagattcatagacgaagttgaagccct 10825420  T
Q  351 tagatgacaatttagaaattccatctcttttatgtttcaatta 393  Q
    ||||||||||||||| ||| |||  ||||||||||||||||||    
T  10825419 tagatgacaatttaggaatcccaattcttttatgtttcaatta 10825377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 393
Target Start/End: Complemental strand, 15857130 - 15857056
Alignment:
Q  320 cttctaagatttatagacgaagt-ggagcctttagatgacaatttagaaattccatctcttttatgtttcaatta 393  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||  |||  ||  ||||||||||||||||||    
T  15857130 cttctaagattcatagacgaagttggagcctttagatgacaatttaagaatctcaattcttttatgtttcaatta 15857056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 404
Target Start/End: Original strand, 27451391 - 27451476
Alignment:
Q  320 cttctaagatttatagacgaagtg-gagcctttagatgacaatttagaaattccatctcttttatgtttcaattacctccgagaga 404  Q
    |||||||||||  ||||| ||||  |||| ||||||||||||||||| |||  || || |||||||||||||||||||| ||||||    
T  27451391 cttctaagattcgtagacaaagtttgagcttttagatgacaatttaggaatatcaactgttttatgtttcaattacctctgagaga 27451476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 9402238 - 9402191
Alignment:
Q  250 ctttgtaaggtagacgagatagggatgtccatttgtagaactactaag 297  Q
    ||||||||||||| |||||||||| ||  |||||||||||||||||||    
T  9402238 ctttgtaaggtaggcgagatagggctgctcatttgtagaactactaag 9402191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 21449723 - 21449676
Alignment:
Q  248 ctctttgtaaggtagacgagatagggatgtccatttgtagaactacta 295  Q
    ||||| ||||||||||||||||||||||| || |||||| ||||||||    
T  21449723 ctcttagtaaggtagacgagatagggatgcccgtttgtaaaactacta 21449676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 149
Target Start/End: Complemental strand, 14393008 - 14392898
Alignment:
Q  39 gaaccacacaccgactcaccactcaagaatccacgaatcaacacaagaaaacatgaatctgaataaaaccatcctcacagcgtcaaaacacagcgatgca 138  Q
    |||||||||||  ||||||||| | | ||| ||  || |||||| |||||||| |||||  ||| |||||||||||||| | ||||||||| || | |||    
T  14393008 gaaccacacactaactcaccacccgaaaattcatcaaccaacaccagaaaacacgaatccaaatcaaaccatcctcacaccatcaaaacacggcaacgca 14392909  T
Q  139 aagctggccac 149  Q
    ||| |||||||    
T  14392908 aagttggccac 14392898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 320 - 404
Target Start/End: Original strand, 25781247 - 25781332
Alignment:
Q  320 cttctaagatttatagacgaagt-ggagcctttagatgacaatttagaaattccatctcttttatgtttcaattacctccgagaga 404  Q
    ||||||||||| |||||| |||| ||||||||||||||||||||||| |||||||  |||||||||||||||||| ||| ||||||    
T  25781247 cttctaagattcatagacaaagttggagcctttagatgacaatttaggaattccaattcttttatgtttcaattaactctgagaga 25781332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 25779984 - 25780036
Alignment:
Q  342 tggagcctttagatgacaatttagaaattccatctcttttatgtttcaattac 394  Q
    |||||||||||||||||||||||| ||| |||  |||||||||||||||||||    
T  25779984 tggagcctttagatgacaatttaggaatcccaattcttttatgtttcaattac 25780036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 30510493 - 30510553
Alignment:
Q  233 aattttactctttttctctttgtaaggtagacgagatagggatgtccatttgtagaactac 293  Q
    ||||||| |||||| | ||| |||||||||||||||||| | ||||  |||||||||||||    
T  30510493 aattttattcttttccccttcgtaaggtagacgagatagagttgtctgtttgtagaactac 30510553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 320 - 392
Target Start/End: Complemental strand, 12565316 - 12565244
Alignment:
Q  320 cttctaagatttatagacgaagtggagcctttagatgacaatttagaaattccatctcttttatgtttcaatt 392  Q
    ||||||||||| |||||||| |||||||||||| |||||||||||| ||| |||| |||||||||||||||||    
T  12565316 cttctaagattcatagacgacgtggagcctttatatgacaatttagtaataccatttcttttatgtttcaatt 12565244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 324 - 396
Target Start/End: Original strand, 24569744 - 24569817
Alignment:
Q  324 taagatttatagacgaagt-ggagcctttagatgacaatttagaaattccatctcttttatgtttcaattacct 396  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||| |||  ||||||||||||| |||||||    
T  24569744 taagattcatagacgaagttggagcctttagatgacaatttagaaataccaattcttttatgtttctattacct 24569817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 403
Target Start/End: Complemental strand, 31014653 - 31014594
Alignment:
Q  344 gagcctttagatgacaatttagaaattccatctcttttatgtttcaattacctccgagag 403  Q
    ||||||||||||||||||||||||||| ||  ||||||||||||||||||| || |||||    
T  31014653 gagcctttagatgacaatttagaaatttcaattcttttatgtttcaattacgtctgagag 31014594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 397
Target Start/End: Original strand, 12657183 - 12657357
Alignment:
Q  224 ttgcatatgaattttactctttttctctttgtaaggtagacgagatagggatgtccatttgtagaactactaaggaagatgagg-tatgttgatttcctt 322  Q
    |||||||| ||||||| |||| | || || ||||| |||| ||||| | ||||||  |||||||||||||||||| |   |||  |||||| ||   |||    
T  12657183 ttgcatattaattttattcttctccttttggtaagctagaagagatggtgatgtctgtttgtagaactactaaggtaatagagaatatgtt-atgaactt 12657281  T
Q  323 ctaagatttatagacgaag-tggagcctttagatgacaatttagaaattccatctcttttatgtttcaattacctc 397  Q
    |||| ||| |||||||||  |||| |||||| |||||||||||||||||  |  ||||||||||||||||||||||    
T  12657282 ctaaaattcatagacgaatctggaccctttaaatgacaatttagaaattttaattcttttatgtttcaattacctc 12657357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 404
Target Start/End: Complemental strand, 28317972 - 28317875
Alignment:
Q  307 gtatgttgatttccttctaagatttatagacgaagtggagcctttagatgacaatttagaaattccatctcttttatgtttcaattacctccgagaga 404  Q
    |||||||||| | ||| ||||||| |||||  |||  |||||||||||||||||||||| |||||    |||||| ||||||| ||||||| ||||||    
T  28317972 gtatgttgatgtacttataagattcatagattaaggagagcctttagatgacaatttaggaattcttcttcttttttgtttcacttacctctgagaga 28317875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 404
Target Start/End: Original strand, 25597472 - 25597543
Alignment:
Q  334 agacgaagt-ggagcctttagatgacaatttagaaattccatctcttttatgtttcaattacctccgagaga 404  Q
    ||||||||| |||| ||| |||||||||||||| |||  || |||||||||||||||||||| || ||||||    
T  25597472 agacgaagttggagtcttaagatgacaatttaggaatctcaactcttttatgtttcaattacgtctgagaga 25597543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 405
Target Start/End: Complemental strand, 28310605 - 28310519
Alignment:
Q  320 cttctaagatttatagacgaagtgg-agcctttagatgacaatttagaaattccatctcttttatgtttcaattacctccgagagat 405  Q
    |||||| |||||||| || |||| | |||||||| |||||| ||||| ||| |||  |||||||||||||||||||||  |||||||    
T  28310605 cttctatgatttataaacaaagttgtagcctttaaatgacattttaggaataccaaatcttttatgtttcaattacctttgagagat 28310519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 17101461 - 17101510
Alignment:
Q  250 ctttgtaaggtagacg-agat-agggatgtccatttgtagaactactaag 297  Q
    |||||||||||||||| |||| ||||||| ||||||||||||||||||||    
T  17101461 ctttgtaaggtagacgtagattagggatgcccatttgtagaactactaag 17101510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 397
Target Start/End: Complemental strand, 18751077 - 18750999
Alignment:
Q  320 cttctaagatttatagacgaagt-ggagcctttagatgacaatttagaaattccatctcttttatgtttcaattacctc 397  Q
    ||||||||||  ||||||||||| ||||||||||||||| ||||||||||| ||   ||||||||||||||||||||||    
T  18751077 cttctaagatgcatagacgaagttggagcctttagatgaaaatttagaaatcccgattcttttatgtttcaattacctc 18750999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 396
Target Start/End: Original strand, 8365240 - 8365317
Alignment:
Q  320 cttctaagatttatagacgaagt-ggagcctttagatgacaatttagaaattccatctcttttatgtttcaattacct 396  Q
    ||||||||||| ||||| ||||| ||||||||||||||||||||||  |||  ||  |||||||||||||||||||||    
T  8365240 cttctaagattcatagatgaagttggagcctttagatgacaatttaagaatctcaattcttttatgtttcaattacct 8365317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 404
Target Start/End: Original strand, 19324239 - 19324312
Alignment:
Q  332 atagacgaag-tggagcctttagatgacaatttagaaattccatctcttttatgtttcaattacctccgagaga 404  Q
    |||||||||| ||| ||||||||| |||||||||||||| |||  |||||||||||||| ||||||| ||||||    
T  19324239 atagacgaaggtggggcctttagaagacaatttagaaataccaattcttttatgtttcagttacctctgagaga 19324312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 397
Target Start/End: Complemental strand, 36357616 - 36357537
Alignment:
Q  319 ccttctaagatttatagacgaagt-ggagcctttagatgacaatttagaaattccatctcttttatgtttcaattacctc 397  Q
    |||||||||||| |||||| |||| |||||||||| |||||||||||| ||| | |  ||||||||||||||||||||||    
T  36357616 ccttctaagattcatagacaaagttggagcctttatatgacaatttaggaatcctaattcttttatgtttcaattacctc 36357537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 404
Target Start/End: Original strand, 27748578 - 27748663
Alignment:
Q  320 cttctaagatttatagacgaagt-ggagcctttagatgacaatttagaaattccatctcttttatgtttcaattacctccgagaga 404  Q
    ||||||||||| ||| | ||||| ||||| |||||||| |||||||||||| |||  ||||||||||||  |||||||| ||||||    
T  27748578 cttctaagattcataaaagaagttggagcatttagatgtcaatttagaaatcccaattcttttatgtttggattacctctgagaga 27748663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 31399720 - 31399773
Alignment:
Q  344 gagcctttagatgacaatttagaaattccatctcttttatgtttcaattacctc 397  Q
    |||||||||| | ||||||||||||| |||  |||||||| |||||||||||||    
T  31399720 gagcctttagctaacaatttagaaataccaattcttttatatttcaattacctc 31399773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 281 - 397
Target Start/End: Complemental strand, 9228550 - 9228433
Alignment:
Q  281 tttgtagaactactaaggaa-gatgaggtatgttgatttccttctaagatttatagacgaagtg-gagcctttagatgacaatttagaaattccatctct 378  Q
    |||||||||||| ||||||| ||  |||||||| ||| | ||| |||||||||||||||||||  ||| |||||||||||||||||   ||  || ||||    
T  9228550 tttgtagaactattaaggaaagaaaaggtatgt-gatgtacttttaagatttatagacgaagtttgagtctttagatgacaatttatggatctcaactct 9228452  T
Q  379 tttatgtttcaattacctc 397  Q
    |||||||||||||||||||    
T  9228451 tttatgtttcaattacctc 9228433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 297
Target Start/End: Complemental strand, 14072814 - 14072771
Alignment:
Q  254 gtaaggtagacgagatagggatgtccatttgtagaactactaag 297  Q
    ||||||||||||| |||||||||||| |||||||||||||||||    
T  14072814 gtaaggtagacgacatagggatgtccgtttgtagaactactaag 14072771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 404
Target Start/End: Original strand, 20560120 - 20560298
Alignment:
Q  223 gttgcatatgaattttactctttttctctttgtaaggtagacgagatagggatgtccatttgtagaactactaag-gaagatgaggtatgttgatttcct 321  Q
    ||||||||  ||||||||||||||   ||| ||||| ||||||| |||||| || || ||| |||||||||||||  |||||  |||||||| |  | ||    
T  20560120 gttgcatagtaattttactcttttctccttggtaagatagacgacatagggctgcccgtttttagaactactaagataagatatggtatgttaacgtact 20560219  T
Q  322 tctaagatttatagacgaagtggagcctttagatgacaatttagaaattccatctcttttatgtttcaattacctccgagaga 404  Q
    ||||||||| |||||  || || |||| ||||||| ||| |||| |||||   ||||| | ||||||||||||||| ||||||    
T  20560220 tctaagattcataga-taaatgcagccgttagatggcaaattaggaattc---ctcttctctgtttcaattacctctgagaga 20560298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 293
Target Start/End: Complemental strand, 34479198 - 34479155
Alignment:
Q  250 ctttgtaaggtagacgagatagggatgtccatttgtagaactac 293  Q
    |||||||||||||||||||||||| || || |||||||||||||    
T  34479198 ctttgtaaggtagacgagatagggctgcccgtttgtagaactac 34479155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 404
Target Start/End: Complemental strand, 15550052 - 15550000
Alignment:
Q  352 agatgacaatttagaaattccatctcttttatgtttcaattacctccgagaga 404  Q
    |||||||||||||| |||  ||  ||||| |||||||||||||||||||||||    
T  15550052 agatgacaatttaggaatctcaattctttaatgtttcaattacctccgagaga 15550000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 26214888 - 26214932
Alignment:
Q  249 tctttgtaaggtagacgagatagggatgtccatttgtagaactac 293  Q
    |||| |||||||||||||||||||| ||||| |||||| ||||||    
T  26214888 tcttggtaaggtagacgagatagggttgtccgtttgtataactac 26214932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 4901382 - 4901426
Alignment:
Q  249 tctttgtaaggtagacgagatagggatgtccatttgtagaactac 293  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||    
T  4901382 tcttggtaaggtagacgagatagggatgcccatttgtagaactac 4901426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 295
Target Start/End: Complemental strand, 26452 - 26410
Alignment:
Q  253 tgtaaggtagacgagatagggatgtccatttgtagaactacta 295  Q
    |||||||||||| ||||| |||||||| |||||||||||||||    
T  26452 tgtaaggtagacaagataaggatgtccgtttgtagaactacta 26410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1122 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1122
Description:

Target: scaffold1122; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 394
Target Start/End: Complemental strand, 1571 - 1522
Alignment:
Q  345 agcctttagatgacaatttagaaattccatctcttttatgtttcaattac 394  Q
    |||||||||||||||||| |||| ||| |  |||||||||||||||||||    
T  1571 agcctttagatgacaattcagaatttctaattcttttatgtttcaattac 1522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University