View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1793_low_4 (Length: 320)

Name: NF1793_low_4
Description: NF1793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1793_low_4
NF1793_low_4
[»] chr5 (23 HSPs)
chr5 (1-310)||(43001510-43001819)
chr5 (1-58)||(14674231-14674288)
chr5 (1-43)||(39698518-39698560)
chr5 (3-40)||(22013394-22013431)
chr5 (2-58)||(6035445-6035501)
chr5 (4-40)||(21522730-21522766)
chr5 (4-40)||(21533296-21533332)
chr5 (1-40)||(15382457-15382496)
chr5 (1-40)||(19552583-19552622)
chr5 (1-40)||(21191096-21191135)
chr5 (1-40)||(36642802-36642841)
chr5 (2-55)||(3966467-3966521)
chr5 (2-60)||(7175060-7175118)
chr5 (2-39)||(19579682-19579719)
chr5 (1-34)||(31084309-31084342)
chr5 (15-60)||(43564844-43564888)
chr5 (4-40)||(6770523-6770559)
chr5 (2-58)||(9449431-9449487)
chr5 (4-63)||(14422856-14422920)
chr5 (30-58)||(15382421-15382449)
chr5 (4-40)||(15410491-15410527)
chr5 (4-60)||(16734826-16734882)
chr5 (28-56)||(41995417-41995445)
[»] chr3 (28 HSPs)
chr3 (86-294)||(42474171-42474379)
chr3 (1-58)||(40052295-40052351)
chr3 (1-60)||(33359720-33359780)
chr3 (1-43)||(10318074-10318116)
chr3 (1-57)||(20503429-20503484)
chr3 (1-40)||(3865596-3865635)
chr3 (1-58)||(26508067-26508129)
chr3 (2-60)||(37077318-37077376)
chr3 (1-61)||(34910276-34910336)
chr3 (2-54)||(6525721-6525773)
chr3 (24-60)||(13845580-13845616)
chr3 (1-40)||(10335326-10335365)
chr3 (1-40)||(14829670-14829709)
chr3 (1-40)||(26492245-26492284)
chr3 (1-58)||(14979138-14979200)
chr3 (5-59)||(22774114-22774168)
chr3 (1-58)||(28812477-28812534)
chr3 (16-57)||(1852600-1852641)
chr3 (1-42)||(10954930-10954971)
chr3 (1-34)||(14747547-14747580)
chr3 (1-34)||(21479104-21479137)
chr3 (2-43)||(21720741-21720782)
chr3 (4-61)||(40993379-40993435)
chr3 (30-58)||(750706-750734)
chr3 (1-33)||(4987331-4987363)
chr3 (30-58)||(14027959-14027987)
chr3 (30-58)||(23870622-23870650)
chr3 (30-58)||(45451523-45451551)
[»] chr1 (25 HSPs)
chr1 (1-57)||(46348423-46348479)
chr1 (1-53)||(18556496-18556548)
chr1 (1-40)||(1486749-1486788)
chr1 (1-58)||(14359561-14359623)
chr1 (1-39)||(42359489-42359527)
chr1 (2-58)||(6427313-6427368)
chr1 (1-57)||(6427425-6427480)
chr1 (1-61)||(31672935-31672990)
chr1 (1-60)||(37598791-37598851)
chr1 (1-40)||(398805-398844)
chr1 (1-40)||(5927380-5927419)
chr1 (1-67)||(17778505-17778568)
chr1 (1-40)||(40917731-40917770)
chr1 (1-40)||(48040502-48040541)
chr1 (1-40)||(48450627-48450666)
chr1 (1-43)||(29144398-29144440)
chr1 (30-60)||(51409979-51410009)
chr1 (2-39)||(2896162-2896199)
chr1 (1-38)||(22515927-22515964)
chr1 (1-42)||(38078701-38078742)
chr1 (1-41)||(9103619-9103659)
chr1 (30-58)||(10577822-10577850)
chr1 (30-58)||(25934572-25934600)
chr1 (30-58)||(38078743-38078771)
chr1 (30-58)||(48548049-48548077)
[»] chr2 (21 HSPs)
chr2 (3-58)||(37558939-37558994)
chr2 (1-60)||(37419702-37419762)
chr2 (1-60)||(19580321-19580380)
chr2 (2-61)||(39323223-39323282)
chr2 (1-58)||(18841053-18841115)
chr2 (1-42)||(21374739-21374780)
chr2 (4-40)||(6940235-6940271)
chr2 (1-60)||(30404890-30404954)
chr2 (1-40)||(12940975-12941014)
chr2 (1-40)||(14996264-14996303)
chr2 (1-40)||(20539714-20539753)
chr2 (4-39)||(24894370-24894405)
chr2 (1-57)||(38117199-38117261)
chr2 (29-60)||(44770206-44770237)
chr2 (1-35)||(27460011-27460045)
chr2 (17-59)||(41843402-41843444)
chr2 (29-58)||(27084230-27084259)
chr2 (30-58)||(21374781-21374809)
chr2 (4-40)||(21624246-21624282)
chr2 (30-58)||(26769461-26769489)
chr2 (30-58)||(27447088-27447116)
[»] chr8 (14 HSPs)
chr8 (1-58)||(36450794-36450851)
chr8 (2-60)||(31109559-31109617)
chr8 (1-40)||(22651956-22651995)
chr8 (1-40)||(29510344-29510383)
chr8 (4-57)||(22204603-22204655)
chr8 (1-37)||(25192387-25192423)
chr8 (1-40)||(13437004-13437043)
chr8 (30-60)||(3951616-3951646)
chr8 (24-58)||(5137484-5137518)
chr8 (1-43)||(5813569-5813611)
chr8 (30-59)||(24413647-24413676)
chr8 (2-58)||(14134661-14134717)
chr8 (1-37)||(15816169-15816205)
chr8 (30-58)||(20785546-20785574)
[»] chr6 (23 HSPs)
chr6 (1-58)||(17841629-17841686)
chr6 (1-57)||(28152062-28152118)
chr6 (1-59)||(17302517-17302575)
chr6 (1-40)||(3398599-3398638)
chr6 (1-40)||(12696304-12696343)
chr6 (1-58)||(10842494-10842551)
chr6 (4-60)||(17435160-17435215)
chr6 (28-60)||(34225886-34225918)
chr6 (1-40)||(426554-426593)
chr6 (1-40)||(7938096-7938135)
chr6 (1-40)||(8365559-8365598)
chr6 (1-40)||(8777013-8777052)
chr6 (1-40)||(9107410-9107449)
chr6 (1-40)||(16766677-16766716)
chr6 (2-40)||(9027158-9027196)
chr6 (1-58)||(10770714-10770776)
chr6 (31-60)||(8777061-8777090)
chr6 (2-43)||(19147444-19147485)
chr6 (30-58)||(7938060-7938088)
chr6 (4-40)||(9658859-9658895)
chr6 (1-56)||(16833267-16833327)
chr6 (30-58)||(18367781-18367809)
chr6 (2-42)||(20371151-20371191)
[»] chr4 (13 HSPs)
chr4 (1-56)||(30298910-30298965)
chr4 (1-56)||(30327778-30327833)
chr4 (1-57)||(12895156-12895211)
chr4 (1-60)||(49430980-49431044)
chr4 (1-40)||(23293026-23293065)
chr4 (4-58)||(24543942-24543997)
chr4 (30-59)||(4157101-4157130)
chr4 (2-56)||(35723426-35723484)
chr4 (6-58)||(7970483-7970535)
chr4 (1-68)||(12797377-12797449)
chr4 (30-58)||(20633429-20633457)
chr4 (30-58)||(22234954-22234982)
chr4 (24-60)||(29205406-29205442)
[»] scaffold0103 (1 HSPs)
scaffold0103 (1-47)||(51784-51830)
[»] chr7 (18 HSPs)
chr7 (5-58)||(15680771-15680824)
chr7 (2-57)||(25791616-25791671)
chr7 (4-58)||(7197340-7197394)
chr7 (1-58)||(18215226-18215283)
chr7 (3-38)||(12010022-12010057)
chr7 (1-40)||(24105658-24105697)
chr7 (1-58)||(11072260-11072317)
chr7 (1-56)||(11665480-11665536)
chr7 (24-60)||(19213771-19213807)
chr7 (2-58)||(26019672-26019728)
chr7 (2-58)||(32308082-32308138)
chr7 (1-40)||(5409876-5409915)
chr7 (1-40)||(11061116-11061155)
chr7 (30-64)||(9778446-9778480)
chr7 (23-60)||(29812741-29812778)
chr7 (4-57)||(37742486-37742539)
chr7 (4-40)||(13770671-13770707)
chr7 (2-58)||(29787410-29787465)
[»] scaffold0053 (1 HSPs)
scaffold0053 (1-40)||(8778-8817)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-61)||(71676-71742)
[»] scaffold0003 (1 HSPs)
scaffold0003 (3-40)||(241574-241611)
[»] scaffold0223 (1 HSPs)
scaffold0223 (1-40)||(20152-20191)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-40)||(178859-178898)
[»] scaffold0306 (1 HSPs)
scaffold0306 (2-40)||(13380-13418)
[»] scaffold0171 (1 HSPs)
scaffold0171 (30-60)||(23369-23399)
[»] scaffold0152 (1 HSPs)
scaffold0152 (2-40)||(21909-21947)
[»] scaffold0086 (1 HSPs)
scaffold0086 (1-43)||(2900-2942)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-58)||(23730-23788)
[»] scaffold0007 (1 HSPs)
scaffold0007 (2-40)||(225309-225347)
[»] scaffold0004 (1 HSPs)
scaffold0004 (2-43)||(92784-92825)
[»] scaffold0116 (1 HSPs)
scaffold0116 (30-58)||(9842-9870)
[»] scaffold0049 (1 HSPs)
scaffold0049 (30-58)||(63709-63737)


Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 43001819 - 43001510
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagatcatatatagtgtgaaataaaaacacacctggataagatgg 100  Q
    |||||||||||||| |||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43001819 ttcaaattattagcagtgtcgacatgtcagtgtccgtgtccgtatccgtgcttcatagatcatatatagtgtgaaataaaaacacacctggataagatgg 43001720  T
Q  101 agcttcattaatgacatggggcaagtcaaaattaatggctttaatgttgggatacttagagacaatcatgttagtaacagttccaattccaccaccaaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43001719 agcttcattaatgacatggggcaagtcaaaattaatggctttaatgttgggatacttagagacaatcatgttagtaacagttccaattccaccaccaaca 43001620  T
Q  201 tcaacaatagatccaagaccctcaaaacctgaatatgtttcaagaactttgttcattatgatactagagtaatcagacatgcccttgttgaaaatcttat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43001619 tcaacaatagatccaagaccctcaaaacctgaatatgtttcaagaactttgttcattatgatactagagtaatcagacatgcccttgttgaaaatcttat 43001520  T
Q  301 tggacctttg 310  Q
    ||||||||||    
T  43001519 tggacctttg 43001510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 14674288 - 14674231
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  14674288 ttcaaattattagctgtgtcggcgtgtcagtgtccgtgtctgtatccgtgcttcatag 14674231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 39698560 - 39698518
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 43  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  39698560 ttcaaattattagctgtgtcagcgtgtcagtgtccgtatccgt 39698518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 22013431 - 22013394
Alignment:
Q  3 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||||||| |||||||||||||||||||    
T  22013431 caaattattagctgtgtcggcgtgtcagtgtccgtgtc 22013394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 6035501 - 6035445
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 58  Q
    ||||||||||||| ||||| |||||||||||||  ||||  ||||||||||||||||    
T  6035501 tcaaattattagcggtgtcggcgtgtcagtgtctttgtctatatccgtgcttcatag 6035445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 21522766 - 21522730
Alignment:
Q  4 aaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    ||||||||||||||||| |||||||||||||||||||    
T  21522766 aaattattagctgtgtcggcgtgtcagtgtccgtgtc 21522730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 21533332 - 21533296
Alignment:
Q  4 aaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    ||||||||||||||||| |||||||||||||||||||    
T  21533332 aaattattagctgtgtcggcgtgtcagtgtccgtgtc 21533296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 15382496 - 15382457
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||||||||| |||||||| ||||||||||    
T  15382496 ttcaaattattagctgtgtcggcgtgtcattgtccgtgtc 15382457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 19552583 - 19552622
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  19552583 ttcaaattattaactgtgtcggcgtgtcagtgtccgtgtc 19552622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 21191096 - 21191135
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  21191096 ttcaaattattagctgtgtcggcatgtcagtgtccgtgtc 21191135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 36642802 - 36642841
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  36642802 ttcaaattattaactgtgtcggcgtgtcagtgtccgtgtc 36642841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 3966521 - 3966467
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtcc-gtgtccgtatccgtgcttca 55  Q
    ||||||||||||| ||||| || ||||||||||| |||||||| |||||||||||    
T  3966521 tcaaattattagcggtgtcggcatgtcagtgtccagtgtccgtgtccgtgcttca 3966467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 7175060 - 7175118
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagat 60  Q
    ||||||||||| | |||||   ||||||||||||||||| |||||| ||||||||||||    
T  7175060 tcaaattattaacggtgtcgatgtgtcagtgtccgtgtctgtatccatgcttcatagat 7175118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 19579719 - 19579682
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtccgtgt 39  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  19579719 tcaaattattagctgtgtcggcgtatcagtgtccgtgt 19579682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 31084342 - 31084309
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtc 34  Q
    |||||||||||||||||||| |||||||||||||    
T  31084342 ttcaaattattagctgtgtcggcgtgtcagtgtc 31084309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 43564888 - 43564844
Alignment:
Q  15 tgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagat 60  Q
    |||||| |||||||||||| |||||||||||||||| |||||||||    
T  43564888 tgtgtcggcgtgtcagtgttcgtgtccgtatccgtg-ttcatagat 43564844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 6770559 - 6770523
Alignment:
Q  4 aaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||| |||||||| |||||||||||||||||    
T  6770559 aaattattagttgtgtcagtgtgtcagtgtccgtgtc 6770523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 9449487 - 9449431
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||   ||||| ||||| ||||||||||||| |||| ||||||||||||    
T  9449487 tcaaattattattggtgtcggcgtgccagtgtccgtgtcggtattcgtgcttcatag 9449431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 14422920 - 14422856
Alignment:
Q  4 aaattattagctgtgtcagcgtgtcagtgtcc-----gtgtccgtatccgtgcttcatagatcat 63  Q
    |||||||||||||| || | ||||||||||||     ||||||||||| ||||||||||||||||    
T  14422920 aaattattagctgtatcggtgtgtcagtgtccttgtcgtgtccgtatctgtgcttcatagatcat 14422856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 15382449 - 15382421
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||||||||||||    
T  15382449 gtgtccgtgtccgtatccgtgcttcatag 15382421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 15410491 - 15410527
Alignment:
Q  4 aaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  15410491 aaattattagcggtgtcggcgtgtcagtgtccgtgtc 15410527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 16734882 - 16734826
Alignment:
Q  4 aaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagat 60  Q
    ||||||||| | ||||| |||||| ||||||||||| |||||  |||||||||||||    
T  16734882 aaattattaacggtgtcggcgtgttagtgtccgtgttcgtatgtgtgcttcatagat 16734826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 56
Target Start/End: Complemental strand, 41995445 - 41995417
Alignment:
Q  28 cagtgtccgtgtccgtatccgtgcttcat 56  Q
    |||||||||||||||||||||||||||||    
T  41995445 cagtgtccgtgtccgtatccgtgcttcat 41995417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 294
Target Start/End: Original strand, 42474171 - 42474379
Alignment:
Q  86 acctggataagatggagcttcattaatgacatggggcaagtcaaaattaatggctttaatgttgggatacttagagacaatcatgttagtaacagttcca 185  Q
    |||||||||||||||||| || | |||||||||||| || |||||||||||  | |||||| ||||||| || ||||||||| ||||| | |||| ||||    
T  42474171 acctggataagatggagcatcttcaatgacatggggtaaatcaaaattaatacccttaatggtgggatattttgagacaatcgtgttaattacagctcca 42474270  T
Q  186 attccaccaccaacatcaacaatagatccaagaccctcaaaacctgaatatgtttcaagaactttgttcattatgatactagagtaatcagacatgccct 285  Q
     | |||||||| |||||||||| ||||  ||| || ||||||||||  || || ||||||| ||| |||||| ||||  |||||| ||||||||| ||||    
T  42474271 gtaccaccacctacatcaacaagagatttaaggccttcaaaacctgtgtaggtctcaagaattttcttcattgtgatggtagagtgatcagacatcccct 42474370  T
Q  286 tgttgaaaa 294  Q
    |||||||||    
T  42474371 tgttgaaaa 42474379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 40052351 - 40052295
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  40052351 ttcaaattattagctgtgtcggcgtgtcagtgt-cgtgtccgtatccgtgcttcatag 40052295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33359780 - 33359720
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtcc-gtatccgtgcttcatagat 60  Q
    |||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||    
T  33359780 ttcaaattattagctgtgtcagcgtgtcagtgtctgtgtccggtgtccgtgcttcatagat 33359720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 10318074 - 10318116
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 43  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  10318074 ttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgt 10318116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 20503484 - 20503429
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 57  Q
    ||||||||||| | |||||| ||||||||||||| ||||||||||||||||||||||    
T  20503484 ttcaaattatttgttgtgtcggcgtgtcagtgtc-gtgtccgtatccgtgcttcata 20503429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 3865596 - 3865635
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  3865596 ttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 3865635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 26508129 - 26508067
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtc-----cgtgtccgtatccgtgcttcatag 58  Q
    ||||||||||||||||||||||||||||||| ||     ||||||||||||||| ||||||||    
T  26508129 ttcaaattattagctgtgtcagcgtgtcagtatctgtatcgtgtccgtatccgttcttcatag 26508067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 37077376 - 37077318
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagat 60  Q
    ||||||||||| | ||||| |||||||| ||||||||||  ||||||||||||||||||    
T  37077376 tcaaattattatcggtgtcggcgtgtcactgtccgtgtctttatccgtgcttcatagat 37077318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 34910336 - 34910276
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccg-tgtccgtatccgtgcttcatagatc 61  Q
    ||||||||||||| |||||| ||||||| ||||| | |||||||||||||||||||||||||    
T  34910336 ttcaaattattagttgtgtcggcgtgtc-gtgtctggtgtccgtatccgtgcttcatagatc 34910276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 6525721 - 6525773
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttc 54  Q
    ||||||||||||| |||||  | ||||||||| ||||||||||||||||||||    
T  6525721 tcaaattattagcggtgtcgacatgtcagtgtacgtgtccgtatccgtgcttc 6525773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 13845580 - 13845616
Alignment:
Q  24 gtgtcagtgtccgtgtccgtatccgtgcttcatagat 60  Q
    ||||| |||||||||||||||||||||||||||||||    
T  13845580 gtgtcggtgtccgtgtccgtatccgtgcttcatagat 13845616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 10335326 - 10335365
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  10335326 ttcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 10335365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 14829709 - 14829670
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  14829709 ttcaaattattagctgtgtcggcgtgtcagtgtctgtgtc 14829670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 26492245 - 26492284
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  26492245 ttcaaattattagctctgtcggcgtgtcagtgtccgtgtc 26492284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 14979200 - 14979138
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtcc-----gtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||| ||||| || |||||     |||||||||||||||||||||||    
T  14979200 ttcaaattattagctgtgtcggcgtgccattgtccttgtcgtgtccgtatccgtgcttcatag 14979138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 22774114 - 22774168
Alignment:
Q  5 aattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcataga 59  Q
    |||||||||  |||||  |||||| ||||| ||||||||||||||||||||||||    
T  22774114 aattattagtggtgtcgacgtgtctgtgtctgtgtccgtatccgtgcttcataga 22774168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 28812534 - 28812477
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccg-tgtccgtatccgtgcttcatag 58  Q
    ||||||||||||| |||||| ||||||| ||||||| |||| |||||||||||||||||    
T  28812534 ttcaaattattagttgtgtcggcgtgtc-gtgtccgttgtctgtatccgtgcttcatag 28812477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 1852641 - 1852600
Alignment:
Q  16 gtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 57  Q
    ||||||||||||| |||||||| || ||||||||||||||||    
T  1852641 gtgtcagcgtgtccgtgtccgtatctgtatccgtgcttcata 1852600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10954971 - 10954930
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccg 42  Q
    ||||||||||||| |||||| |||||||||||| ||||||||    
T  10954971 ttcaaattattagttgtgtcggcgtgtcagtgttcgtgtccg 10954930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 14747580 - 14747547
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtc 34  Q
    |||||||||||||||||||| |||||||||||||    
T  14747580 ttcaaattattagctgtgtcggcgtgtcagtgtc 14747547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 21479137 - 21479104
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtc 34  Q
    |||||||||||||||||||| |||||||||||||    
T  21479137 ttcaaattattagctgtgtcggcgtgtcagtgtc 21479104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 21720782 - 21720741
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 43  Q
    ||||||||||| | ||||| ||||||||||||||||||||||    
T  21720782 tcaaattattatcggtgtcggcgtgtcagtgtccgtgtccgt 21720741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 40993379 - 40993435
Alignment:
Q  4 aaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagatc 61  Q
    ||||||||||| |||||   ||||| ||||| ||||||||||||||||||||||||||    
T  40993379 aaattattagcggtgtcgaggtgtccgtgtc-gtgtccgtatccgtgcttcatagatc 40993435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 750706 - 750734
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||||||||||||    
T  750706 gtgtccgtgtccgtatccgtgcttcatag 750734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 4987331 - 4987363
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgt 33  Q
    |||||||||||||||||||| ||||||||||||    
T  4987331 ttcaaattattagctgtgtcggcgtgtcagtgt 4987363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 14027987 - 14027959
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||||||||||||    
T  14027987 gtgtccgtgtccgtatccgtgcttcatag 14027959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 23870622 - 23870650
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||||||||||||    
T  23870622 gtgtccgtgtccgtatccgtgcttcatag 23870650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 45451551 - 45451523
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||||||||||||    
T  45451551 gtgtccgtgtccgtatccgtgcttcatag 45451523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 46348423 - 46348479
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 57  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46348423 ttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgcttcata 46348479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 18556496 - 18556548
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgctt 53  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18556496 ttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgctt 18556548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 1486749 - 1486788
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  1486749 ttcaaattattagctgtgtcagcgtgtcagtatccgtgtc 1486788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 14359561 - 14359623
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtc-----cgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||| ||||||| |||||     ||||||||||||||||||||||||    
T  14359561 ttcaaattattagctgtgtcggcgtgtccgtgtctgtgtcgtgtccgtatccgtgcttcatag 14359623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 42359489 - 42359527
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgt 39  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  42359489 ttcaaattattagatgtgtcagcgtgtcagtgtccgtgt 42359527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 6427368 - 6427313
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 58  Q
    ||||||||||||| ||||  ||||||||||||||||| |||| ||||||||||||||    
T  6427368 tcaaattattagcggtgttggcgtgtcagtgtccgtg-ccgtgtccgtgcttcatag 6427313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 6427480 - 6427425
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 57  Q
    ||||||||||||| |||||| || ||||||||| ||||||||||||| |||||||||    
T  6427480 ttcaaattattagttgtgtcggcatgtcagtgt-cgtgtccgtatccatgcttcata 6427425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 31672935 - 31672990
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagatc 61  Q
    |||||||||||||||||||| | |||||||||||     ||||||||||||||||||||||    
T  31672935 ttcaaattattagctgtgtcggtgtgtcagtgtc-----ccgtatccgtgcttcatagatc 31672990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 37598851 - 37598791
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtcc-gtgtccgtatccgtgcttcatagat 60  Q
    ||||||||||||| |||||| |||||||||||||| ||||| || ||||||| ||||||||    
T  37598851 ttcaaattattagttgtgtcggcgtgtcagtgtccggtgtctgtgtccgtgcgtcatagat 37598791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 398805 - 398844
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||| ||||| |||||||||||||||||||    
T  398805 ttcaaattattagcggtgtcggcgtgtcagtgtccgtgtc 398844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 5927380 - 5927419
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  5927380 ttcaaattattagcagtgttagcgtgtcagtgtccgtgtc 5927419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 17778568 - 17778505
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagatcatatat 67  Q
    |||||||||||||||||||| |  | || ||||| |||||||||||||||||||||||| |||||||    
T  17778568 ttcaaattattagctgtgtctg--tctccgtgtc-gtgtccgtatccgtgcttcatagagcatatat 17778505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 40917770 - 40917731
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  40917770 ttcaaattattagctgtgtcggcgtgtcagtatccgtgtc 40917731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 48040502 - 48040541
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  48040502 ttcaaattattatctgtgtcggcgtgtcagtgtccgtgtc 48040541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 48450627 - 48450666
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  48450627 ttcaaattattagctgtgttggcgtgtcagtgtccgtgtc 48450666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29144398 - 29144440
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 43  Q
    |||||||||||||||||||| |||| |||||||| ||||||||    
T  29144398 ttcaaattattagctgtgtcggcgtatcagtgtcagtgtccgt 29144440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 51410009 - 51409979
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcatagat 60  Q
    |||||||||||||||||||||||||||||||    
T  51410009 gtgtccgtgtccgtatccgtgcttcatagat 51409979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 2896162 - 2896199
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtccgtgt 39  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  2896162 tcaaattattagcggtgtcggcgtgtcagtgtccgtgt 2896199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22515927 - 22515964
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtg 38  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  22515927 ttcaaattattagctgtgtctgcgtgtccgtgtccgtg 22515964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38078701 - 38078742
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccg 42  Q
    ||||||||||||||||||||  ||||||||||| ||||||||    
T  38078701 ttcaaattattagctgtgtcgacgtgtcagtgttcgtgtccg 38078742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 9103659 - 9103619
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtcc 41  Q
    |||||||||||| ||||||| ||||||||||||||| ||||    
T  9103659 ttcaaattattaactgtgtcggcgtgtcagtgtccgagtcc 9103619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 10577822 - 10577850
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||||||||||||    
T  10577822 gtgtccgtgtccgtatccgtgcttcatag 10577850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 25934600 - 25934572
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||||||||||||    
T  25934600 gtgtccgtgtccgtatccgtgcttcatag 25934572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 38078743 - 38078771
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||||||||||||    
T  38078743 gtgtccgtgtccgtatccgtgcttcatag 38078771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 48548049 - 48548077
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||||||||||||    
T  48548049 gtgtccgtgtccgtatccgtgcttcatag 48548077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 37558994 - 37558939
Alignment:
Q  3 caaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37558994 caaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatccgtgcttcatag 37558939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 37419762 - 37419702
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccg-tgtccgtatccgtgcttcatagat 60  Q
    ||||||||||| ||  |||| ||||||||||||||| ||||||||||||||||||||||||    
T  37419762 ttcaaattatttgccatgtcggcgtgtcagtgtccggtgtccgtatccgtgcttcatagat 37419702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 19580321 - 19580380
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagat 60  Q
    |||||||||||| ||||| | | || ||||||||||||||||||||||| ||||||||||    
T  19580321 ttcaaattattaactgtgacggtgtatcagtgtccgtgtccgtatccgtacttcatagat 19580380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 39323282 - 39323223
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagatc 61  Q
    ||||||||||||| |||||  ||| ||||||||||||||||||| ||||||| |||||||    
T  39323282 tcaaattattagcggtgtcgacgtttcagtgtccgtgtccgtattcgtgctttatagatc 39323223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 18841053 - 18841115
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtc-----cgtgtccgtatccgtgcttcatag 58  Q
    ||||||||||||| ||||||||||||||||||||     ||||||||||| ||||||||||||    
T  18841053 ttcaaattattagttgtgtcagcgtgtcagtgtccatgtcgtgtccgtatacgtgcttcatag 18841115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21374739 - 21374780
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccg 42  Q
    |||||||||||||||||||| |||||| ||||||||||||||    
T  21374739 ttcaaattattagctgtgtcggcgtgttagtgtccgtgtccg 21374780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 6940271 - 6940235
Alignment:
Q  4 aaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    ||||||||||||||||| |||||||||||||||||||    
T  6940271 aaattattagctgtgtcggcgtgtcagtgtccgtgtc 6940235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 30404890 - 30404954
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccg-----tgtccgtatccgtgcttcatagat 60  Q
    |||||||||||| | ||||| |||||||||||||||     ||||||||||||||||||||||||    
T  30404890 ttcaaattattaaccgtgtcggcgtgtcagtgtccgtgtcatgtccgtatccgtgcttcatagat 30404954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 12940975 - 12941014
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  12940975 ttcaaattattagttgtgtcaacgtgtcagtgtccgtgtc 12941014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 14996264 - 14996303
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  14996264 ttcaaattattagctgtgtcggcttgtcagtgtccgtgtc 14996303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 20539714 - 20539753
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  20539714 ttcaaattattagctgtgtcgacgtgtcagtgtccgtgtc 20539753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 24894405 - 24894370
Alignment:
Q  4 aaattattagctgtgtcagcgtgtcagtgtccgtgt 39  Q
    ||||||||||||||||| ||||||||||||||||||    
T  24894405 aaattattagctgtgtcggcgtgtcagtgtccgtgt 24894370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38117199 - 38117261
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgt------ccgtgtccgtatccgtgcttcata 57  Q
    |||||||||||||||||||| ||||||||||||      | ||||||||||||||||||||||    
T  38117199 ttcaaattattagctgtgtcggcgtgtcagtgtcgtgtccggtgtccgtatccgtgcttcata 38117261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 60
Target Start/End: Original strand, 44770206 - 44770237
Alignment:
Q  29 agtgtccgtgtccgtatccgtgcttcatagat 60  Q
    ||||||||||||||||||||||||||||||||    
T  44770206 agtgtccgtgtccgtatccgtgcttcatagat 44770237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 27460045 - 27460011
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtcc 35  Q
    |||||||||||||||||||| ||||||||||||||    
T  27460045 ttcaaattattagctgtgtcggcgtgtcagtgtcc 27460011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 41843444 - 41843402
Alignment:
Q  17 tgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcataga 59  Q
    |||| |||||||||||||||||| | |||||||||||||||||    
T  41843444 tgtcggcgtgtcagtgtccgtgttcatatccgtgcttcataga 41843402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 27084259 - 27084230
Alignment:
Q  29 agtgtccgtgtccgtatccgtgcttcatag 58  Q
    ||||||||||||||||||||||||||||||    
T  27084259 agtgtccgtgtccgtatccgtgcttcatag 27084230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 21374781 - 21374809
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||||||||||||    
T  21374781 gtgtccgtgtccgtatccgtgcttcatag 21374809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 21624282 - 21624246
Alignment:
Q  4 aaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  21624282 aaattattagctgtgtcggcgtgtcagtgtctgtgtc 21624246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 26769489 - 26769461
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||||||||||||    
T  26769489 gtgtccgtgtccgtatccgtgcttcatag 26769461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 27447088 - 27447116
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||||||||||||    
T  27447088 gtgtccgtgtccgtatccgtgcttcatag 27447116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 36450794 - 36450851
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 58  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  36450794 ttcaaattattagttgtgtcggcgtgtcagtgtccgtgtccgtatccgtgcttcatag 36450851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 31109559 - 31109617
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagat 60  Q
    ||||||||||| | ||||| |||||||||||||||||||| |||| |||||||||||||    
T  31109559 tcaaattattaacggtgtcggcgtgtcagtgtccgtgtccatatcagtgcttcatagat 31109617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 22651995 - 22651956
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  22651995 ttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 22651956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29510344 - 29510383
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  29510344 ttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 29510383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 22204655 - 22204603
Alignment:
Q  4 aaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 57  Q
    |||||||||| |||||| |||||||||||||||| ||||||||| |||||||||    
T  22204655 aaattattagttgtgtcggcgtgtcagtgtccgtatccgtatcc-tgcttcata 22204603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25192387 - 25192423
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgt 37  Q
    |||||||||||||||||||| ||||||||||||||||    
T  25192387 ttcaaattattagctgtgtcggcgtgtcagtgtccgt 25192423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13437004 - 13437043
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  13437004 ttcaaattattagctgtgtcggcgtgtcagtgtccatgtc 13437043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 60
Target Start/End: Original strand, 3951616 - 3951646
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcatagat 60  Q
    |||||||||||||||||||||||||||||||    
T  3951616 gtgtccgtgtccgtatccgtgcttcatagat 3951646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 5137484 - 5137518
Alignment:
Q  24 gtgtcagtgtccgtgtccgtatccgtgcttcatag 58  Q
    ||||| |||||||||||||||||||||||||||||    
T  5137484 gtgtccgtgtccgtgtccgtatccgtgcttcatag 5137518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 5813611 - 5813569
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 43  Q
    |||||||||||||||||||| ||||||| |||||||| |||||    
T  5813611 ttcaaattattagctgtgtcggcgtgtccgtgtccgtatccgt 5813569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 24413647 - 24413676
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcataga 59  Q
    ||||||||||||||||||||||||||||||    
T  24413647 gtgtccgtgtccgtatccgtgcttcataga 24413676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 14134717 - 14134661
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 58  Q
    ||||||||||||   ||||  |||||| ||||| |||||||||||||||||||||||    
T  14134717 tcaaattattagtattgtcgacgtgtccgtgtcggtgtccgtatccgtgcttcatag 14134661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15816169 - 15816205
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgt 37  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  15816169 ttcaaattattagttgtgtcggcgtgtcagtgtccgt 15816205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 20785546 - 20785574
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||||||||||||    
T  20785546 gtgtccgtgtccgtatccgtgcttcatag 20785574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 17841629 - 17841686
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  17841629 ttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatcagtgcttcatag 17841686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 28152118 - 28152062
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 57  Q
    ||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||    
T  28152118 ttcaaattattagctttgtcggcgtgtcagtgtccgtgtccatatccgtgcttcata 28152062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 17302575 - 17302517
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcataga 59  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||| | ||||||||||    
T  17302575 ttcaaattattagttgtgtcagcgtgtcagtgttcgtgtccgtatctgcgcttcataga 17302517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 3398638 - 3398599
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  3398638 ttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 3398599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 12696343 - 12696304
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  12696343 ttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 12696304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 10842551 - 10842494
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||| ||||| ||||||| |||||  ||||||| ||||||||||||||    
T  10842551 ttcaaattattagcggtgtcggcgtgtccgtgtcaatgtccgtgtccgtgcttcatag 10842494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 17435215 - 17435160
Alignment:
Q  4 aaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatagat 60  Q
    |||||||||||| ||||  ||| ||||||||||||| ||||||||||||||||||||    
T  17435215 aaattattagctatgtcgacgtatcagtgtccgtgt-cgtatccgtgcttcatagat 17435160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 34225886 - 34225918
Alignment:
Q  28 cagtgtccgtgtccgtatccgtgcttcatagat 60  Q
    |||||||||||||||||||||||||||||||||    
T  34225886 cagtgtccgtgtccgtatccgtgcttcatagat 34225918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 426554 - 426593
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  426554 ttcaaattattaactgtgtcggcgtgtcagtgtccgtgtc 426593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 7938135 - 7938096
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  7938135 ttcaaattattagctgtgtcggcgtgtcagtgtccatgtc 7938096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 8365559 - 8365598
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  8365559 ttcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 8365598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 8777013 - 8777052
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  8777013 ttcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 8777052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 9107410 - 9107449
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||||||||| |||||| ||||||||||||    
T  9107410 ttcaaattattagctgtgtcggcgtgttagtgtccgtgtc 9107449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 16766716 - 16766677
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  16766716 ttcaaattattagctgtgtcggcgtgtcagtgtccatgtc 16766677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 9027196 - 9027158
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    ||||||||||||| ||||| |||||||||||||||||||    
T  9027196 tcaaattattagcggtgtcggcgtgtcagtgtccgtgtc 9027158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 10770714 - 10770776
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtc-----cgtgtccgtatccgtgcttcatag 58  Q
    ||||||||||||| |||||  |||||||||||||     ||||||||||||||||||||||||    
T  10770714 ttcaaattattagttgtgttggcgtgtcagtgtccatgtcgtgtccgtatccgtgcttcatag 10770776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 60
Target Start/End: Original strand, 8777061 - 8777090
Alignment:
Q  31 tgtccgtgtccgtatccgtgcttcatagat 60  Q
    ||||||||||||||||||||||||||||||    
T  8777061 tgtccgtgtccgtatccgtgcttcatagat 8777090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 19147444 - 19147485
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 43  Q
    ||||||||||||||||||| | |||||||||||||| |||||    
T  19147444 tcaaattattagctgtgtccgtgtgtcagtgtccgtatccgt 19147485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 7938088 - 7938060
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||||||||||||    
T  7938088 gtgtccgtgtccgtatccgtgcttcatag 7938060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 9658895 - 9658859
Alignment:
Q  4 aaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  9658895 aaattattagcggtgtcggcgtgtcagtgtccgtgtc 9658859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 16833327 - 16833267
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtc-----cgtgtccgtatccgtgcttcat 56  Q
    ||||||||||||| |||||| |||||||||||||     |||||||||||| |||||||||    
T  16833327 ttcaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgtccgtatcagtgcttcat 16833267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 18367809 - 18367781
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||||||||||||    
T  18367809 gtgtccgtgtccgtatccgtgcttcatag 18367781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 20371151 - 20371191
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtccgtgtccg 42  Q
    ||||||||||||| ||||| |||||||| ||||||||||||    
T  20371151 tcaaattattagcggtgtcggcgtgtcaatgtccgtgtccg 20371191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 30298965 - 30298910
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcat 56  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  30298965 ttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatctgtgcttcat 30298910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 30327833 - 30327778
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcat 56  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  30327833 ttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatctgtgcttcat 30327778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 12895156 - 12895211
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 57  Q
    ||||||||||||||||| || ||||||| ||||||||||||||||| ||||||||||    
T  12895156 ttcaaattattagctgtttcggcgtgtc-gtgtccgtgtccgtatctgtgcttcata 12895211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 49431044 - 49430980
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtc-----cgtgtccgtatccgtgcttcatagat 60  Q
    |||||||||||||||||||| |||||||| ||||     ||||||||| ||||||||||||||||    
T  49431044 ttcaaattattagctgtgtcggcgtgtcactgtccgagtcgtgtccgtgtccgtgcttcatagat 49430980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 23293026 - 23293065
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||||||||| |||||||| ||||||||||    
T  23293026 ttcaaattattagctgtgtcggcgtgtcattgtccgtgtc 23293065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 24543997 - 24543942
Alignment:
Q  4 aaattattagctgtgtcagcgtgtcagtgtc-cgtgtccgtatccgtgcttcatag 58  Q
    |||||||||| |||||| |||||||||||||  |||||||||||| ||||||||||    
T  24543997 aaattattagttgtgtcggcgtgtcagtgtctggtgtccgtatccatgcttcatag 24543942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 4157130 - 4157101
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcataga 59  Q
    ||||||||||||||||||||||||||||||    
T  4157130 gtgtccgtgtccgtatccgtgcttcataga 4157101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 35723426 - 35723484
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtc----cgtgtccgtatccgtgcttcat 56  Q
    ||||||||||||| ||||| |||||||||||||    |||||||||||| |||||||||    
T  35723426 tcaaattattagcggtgtcggcgtgtcagtgtcatgtcgtgtccgtatcggtgcttcat 35723484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 7970535 - 7970483
Alignment:
Q  6 attattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||| || |||||||| |||||||||| ||||||| ||| |||||||||||    
T  7970535 attattggcggtgtcagcatgtcagtgtctgtgtccggatctgtgcttcatag 7970483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 12797377 - 12797449
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtg-----tccgtatccgtgcttcatagatcatatata 68  Q
    ||||||||||||| | || | |||||||||||||||||     |||||||||||||||||||  |||||||||    
T  12797377 ttcaaattattagttttgccggcgtgtcagtgtccgtgtcgtatccgtatccgtgcttcataagtcatatata 12797449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 20633457 - 20633429
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||||||||||||    
T  20633457 gtgtccgtgtccgtatccgtgcttcatag 20633429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Original strand, 22234954 - 22234982
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||||||||||||    
T  22234954 gtgtccgtgtccgtatccgtgcttcatag 22234982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 29205442 - 29205406
Alignment:
Q  24 gtgtcagtgtccgtgtccgtatccgtgcttcatagat 60  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  29205442 gtgtccgtgtccatgtccgtatccgtgcttcatagat 29205406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 51830 - 51784
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatcc 47  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  51830 ttcaaattattagctgtgtcggcgtgtcagtgtccgtgtccgtatcc 51784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 15680824 - 15680771
Alignment:
Q  5 aattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 58  Q
    ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||    
T  15680824 aattattagctatgtcggcgtgtcagtgtccatgtccgtatccgtgcttcatag 15680771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 25791671 - 25791616
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 57  Q
    |||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||||    
T  25791671 tcaaataattagcggtgtcggcgtgtcagtgtctgtgtccgtatccgtgcttcata 25791616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 7197340 - 7197394
Alignment:
Q  4 aaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 58  Q
    ||||||||||||||||| |||||||| |||| |||| ||||||||||||||||||    
T  7197340 aaattattagctgtgtcggcgtgtcaatgtctgtgttcgtatccgtgcttcatag 7197394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 18215226 - 18215283
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||| ||| |||||| |||||||||||| | |||||||||||||||    
T  18215226 ttcaaattattagctgcgtcggcgtgttagtgtccgtgtctgcatccgtgcttcatag 18215283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 12010022 - 12010057
Alignment:
Q  3 caaattattagctgtgtcagcgtgtcagtgtccgtg 38  Q
    ||||||||||||||||||||||||||||||||||||    
T  12010022 caaattattagctgtgtcagcgtgtcagtgtccgtg 12010057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 24105697 - 24105658
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  24105697 ttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 24105658  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 11072317 - 11072260
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||| | ||||| ||||||| |||| ||||||||||||| ||||||||||    
T  11072317 ttcaaattattatcggtgtcggcgtgtctgtgttcgtgtccgtatccatgcttcatag 11072260  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11665480 - 11665536
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtcc-gtgtccgtatccgtgcttcat 56  Q
    ||||||||||||| ||||||||||||||| | ||| |||||||||||||| ||||||    
T  11665480 ttcaaattattagttgtgtcagcgtgtcaatatccagtgtccgtatccgttcttcat 11665536  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 19213807 - 19213771
Alignment:
Q  24 gtgtcagtgtccgtgtccgtatccgtgcttcatagat 60  Q
    ||||||||||||||||||| |||||||||||||||||    
T  19213807 gtgtcagtgtccgtgtccgcatccgtgcttcatagat 19213771  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 26019672 - 26019728
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||| |||| ||| | |||||||||  ||||||||||||||||||||||||||    
T  26019672 tcaaattactagcggtgccggcgtgtcaggatccgtgtccgtatccgtgcttcatag 26019728  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 32308138 - 32308082
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 58  Q
    ||||||||||||| ||||| |||||||||||||| ||| |||||  |||||||||||    
T  32308138 tcaaattattagcggtgtcggcgtgtcagtgtccatgttcgtatttgtgcttcatag 32308082  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 5409876 - 5409915
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  5409876 ttcaaattattagctgtatcagcgtgtcagtgtccatgtc 5409915  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 11061116 - 11061155
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  11061116 ttcaaattattagctgtgtcggtgtgtcagtgtccgtgtc 11061155  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 9778480 - 9778446
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcatagatcata 64  Q
    ||||||||||||||||||||||||||||| |||||    
T  9778480 gtgtccgtgtccgtatccgtgcttcatagctcata 9778446  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 29812741 - 29812778
Alignment:
Q  23 cgtgtcagtgtccgtgtccgtatccgtgcttcatagat 60  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  29812741 cgtgtctgtgtccgtgtccgtgtccgtgcttcatagat 29812778  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 37742539 - 37742486
Alignment:
Q  4 aaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcata 57  Q
    ||||||||||  ||||| ||||| ||||||||||||| ||||||||| ||||||    
T  37742539 aaattattagtggtgtcggcgtggcagtgtccgtgtctgtatccgtgtttcata 37742486  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 13770707 - 13770671
Alignment:
Q  4 aaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  13770707 aaattattagctgtgtcggcgtatcagtgtccgtgtc 13770671  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 29787410 - 29787465
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgtatccgtgcttcatag 58  Q
    ||||||||||||| ||||| |||||| | |||||||||  |||||||||||||||||    
T  29787410 tcaaattattagcggtgtcggcgtgttaatgtccgtgt-tgtatccgtgcttcatag 29787465  T

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Target: scaffold0053 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 8817 - 8778
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  8817 ttcaaattattagctgtgtcggcgtgtcagtgtccgtgtc 8778  T

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Target: scaffold0019 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 71742 - 71676
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtc-----cg-tgtccgtatccgtgcttcatagatc 61  Q
    |||||||||||||||||||| |||||||||||||     || |||||||||||||||||||||||||    
T  71742 ttcaaattattagctgtgtcggcgtgtcagtgtcgtgtccgatgtccgtatccgtgcttcatagatc 71676  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 241611 - 241574
Alignment:
Q  3 caaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||||||| |||||||||||||||||||    
T  241611 caaattattagctgtgtcggcgtgtcagtgtccgtgtc 241574  T

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Target: scaffold0223 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 20191 - 20152
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||||||||||| |||||||| ||||||||||    
T  20191 ttcaaattattagctgtgtcggcgtgtcattgtccgtgtc 20152  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 178859 - 178898
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  178859 ttcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 178898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 13418 - 13380
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  13418 tcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 13380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 23399 - 23369
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcatagat 60  Q
    |||||||||||||||||||||||||||||||    
T  23399 gtgtccgtgtccgtatccgtgcttcatagat 23369  T

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Target: scaffold0152 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 21909 - 21947
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  21909 tcaaattattagttgtgtcggcgtgtcagtgtccgtgtc 21947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2942 - 2900
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 43  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||    
T  2942 ttcaaattattagctatgttagcgtgtcagtgtccgtatccgt 2900  T

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Target: scaffold0025 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 23788 - 23730
Alignment:
Q  1 ttcaaattattagctgtgtcagcgtgtcagtgtcc-gtgtccgtatccgtgcttcatag 58  Q
    |||||||||||| ||||| ||| |||||||||||| |||| |||||||||| |||||||    
T  23788 ttcaaattattaactgtgacagtgtgtcagtgtccggtgttcgtatccgtgtttcatag 23730  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 225309 - 225347
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtccgtgtc 40  Q
    ||||||||||| ||||||| |||||||||||||||||||    
T  225309 tcaaattattatctgtgtcggcgtgtcagtgtccgtgtc 225347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 92825 - 92784
Alignment:
Q  2 tcaaattattagctgtgtcagcgtgtcagtgtccgtgtccgt 43  Q
    ||||||||||||| ||||| |||||||||||||||| |||||    
T  92825 tcaaattattagcggtgtcggcgtgtcagtgtccgtatccgt 92784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 9870 - 9842
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||||||||||||    
T  9870 gtgtccgtgtccgtatccgtgcttcatag 9842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 63737 - 63709
Alignment:
Q  30 gtgtccgtgtccgtatccgtgcttcatag 58  Q
    |||||||||||||||||||||||||||||    
T  63737 gtgtccgtgtccgtatccgtgcttcatag 63709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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