View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1793_low_6 (Length: 250)

Name: NF1793_low_6
Description: NF1793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1793_low_6
NF1793_low_6
[»] chr4 (32 HSPs)
chr4 (106-232)||(32115244-32115370)
chr4 (9-59)||(28957310-28957360)
chr4 (9-59)||(31227878-31227928)
chr4 (12-59)||(2669481-2669528)
chr4 (12-59)||(28957785-28957832)
chr4 (10-56)||(12107708-12107754)
chr4 (12-59)||(30546189-30546236)
chr4 (12-59)||(40841461-40841508)
chr4 (12-59)||(43980032-43980079)
chr4 (12-58)||(31228353-31228399)
chr4 (12-59)||(12922641-12922688)
chr4 (12-59)||(28505208-28505255)
chr4 (12-59)||(38026150-38026197)
chr4 (12-59)||(40841936-40841983)
chr4 (12-58)||(38025676-38025722)
chr4 (12-56)||(55347563-55347607)
chr4 (12-59)||(789894-789941)
chr4 (12-59)||(1317535-1317582)
chr4 (12-59)||(21235027-21235074)
chr4 (12-59)||(46262634-46262681)
chr4 (13-59)||(1317059-1317105)
chr4 (13-59)||(30545712-30545758)
chr4 (13-59)||(46263111-46263157)
chr4 (12-59)||(2669006-2669053)
chr4 (12-51)||(55348012-55348051)
chr4 (13-59)||(790371-790417)
chr4 (29-59)||(5544956-5544986)
chr4 (13-59)||(12923118-12923164)
chr4 (29-59)||(26168280-26168310)
chr4 (13-59)||(43979556-43979602)
chr4 (29-59)||(47058568-47058598)
chr4 (12-57)||(12108332-12108377)
[»] chr6 (13 HSPs)
chr6 (9-59)||(20824635-20824685)
chr6 (12-59)||(14257146-14257193)
chr6 (9-59)||(15147717-15147767)
chr6 (12-59)||(20824163-20824210)
chr6 (12-59)||(33107404-33107451)
chr6 (12-59)||(34984587-34984634)
chr6 (12-57)||(6162731-6162776)
chr6 (12-59)||(14257621-14257668)
chr6 (12-59)||(15148192-15148239)
chr6 (13-56)||(33106931-33106974)
chr6 (29-58)||(8709649-8709678)
chr6 (29-58)||(14712830-14712859)
chr6 (26-58)||(5974763-5974795)
[»] chr5 (27 HSPs)
chr5 (9-59)||(5746760-5746810)
chr5 (9-59)||(28641160-28641210)
chr5 (9-59)||(31162892-31162942)
chr5 (12-59)||(5747235-5747282)
chr5 (12-59)||(6543414-6543461)
chr5 (12-58)||(21949400-21949446)
chr5 (12-59)||(28641635-28641682)
chr5 (12-59)||(31162420-31162467)
chr5 (12-59)||(39402211-39402258)
chr5 (12-59)||(39402688-39402735)
chr5 (9-59)||(3879244-3879294)
chr5 (9-59)||(6543886-6543935)
chr5 (12-59)||(31093470-31093517)
chr5 (12-57)||(21949874-21949919)
chr5 (19-59)||(14625121-14625161)
chr5 (12-59)||(3191797-3191844)
chr5 (12-59)||(3192274-3192321)
chr5 (13-59)||(3878771-3878817)
chr5 (29-59)||(87149-87179)
chr5 (29-59)||(119009-119039)
chr5 (29-59)||(120019-120049)
chr5 (13-59)||(31092994-31093040)
chr5 (29-59)||(35373620-35373650)
chr5 (26-58)||(13987456-13987488)
chr5 (27-59)||(19352298-19352330)
chr5 (25-57)||(35294850-35294882)
chr5 (25-57)||(35295672-35295704)
[»] chr3 (23 HSPs)
chr3 (9-59)||(46690153-46690203)
chr3 (12-59)||(36899253-36899300)
chr3 (12-59)||(4199929-4199976)
chr3 (12-59)||(27475389-27475436)
chr3 (12-59)||(34949755-34949802)
chr3 (12-59)||(42606279-42606326)
chr3 (12-59)||(45539683-45539730)
chr3 (12-54)||(2388636-2388678)
chr3 (12-59)||(4199452-4199499)
chr3 (12-59)||(42606754-42606801)
chr3 (12-59)||(45539208-45539255)
chr3 (12-59)||(46689681-46689728)
chr3 (12-59)||(2389106-2389153)
chr3 (12-59)||(22407317-22407364)
chr3 (12-59)||(36899728-36899775)
chr3 (13-59)||(27475774-27475820)
chr3 (28-59)||(35300743-35300774)
chr3 (29-59)||(20826727-20826757)
chr3 (29-59)||(20831162-20831192)
chr3 (13-59)||(22406841-22406887)
chr3 (13-59)||(34950232-34950278)
chr3 (29-57)||(9217994-9218022)
chr3 (17-57)||(27013583-27013623)
[»] chr2 (27 HSPs)
chr2 (9-59)||(11450755-11450805)
chr2 (9-59)||(27378120-27378170)
chr2 (12-59)||(1804231-1804278)
chr2 (12-59)||(1804706-1804753)
chr2 (12-59)||(6476086-6476133)
chr2 (12-59)||(6476561-6476608)
chr2 (12-59)||(11451230-11451277)
chr2 (12-59)||(27377648-27377695)
chr2 (12-59)||(3854541-3854588)
chr2 (12-59)||(22704428-22704475)
chr2 (9-59)||(39096997-39097047)
chr2 (12-59)||(12090169-12090216)
chr2 (12-58)||(26525938-26525984)
chr2 (12-59)||(39096523-39096570)
chr2 (13-59)||(3854065-3854111)
chr2 (15-58)||(26525462-26525505)
chr2 (12-59)||(34037808-34037855)
chr2 (29-59)||(7083694-7083724)
chr2 (29-59)||(10708022-10708052)
chr2 (13-59)||(12089693-12089739)
chr2 (17-59)||(24093432-24093474)
chr2 (29-59)||(32860985-32861015)
chr2 (29-59)||(39947147-39947177)
chr2 (29-59)||(44929982-44930012)
chr2 (29-59)||(44934744-44934774)
chr2 (27-59)||(2035607-2035639)
chr2 (27-59)||(10711061-10711093)
[»] chr1 (22 HSPs)
chr1 (9-59)||(32266954-32267004)
chr1 (12-59)||(32266482-32266529)
chr1 (12-59)||(47410897-47410944)
chr1 (9-59)||(40124547-40124597)
chr1 (12-59)||(9122684-9122731)
chr1 (12-59)||(17968036-17968083)
chr1 (12-59)||(45230604-45230651)
chr1 (12-59)||(46802321-46802368)
chr1 (12-58)||(30428148-30428194)
chr1 (12-58)||(9123159-9123205)
chr1 (12-59)||(40124075-40124122)
chr1 (12-59)||(47410422-47410469)
chr1 (13-59)||(30427672-30427718)
chr1 (28-59)||(46802812-46802843)
chr1 (26-56)||(4288324-4288354)
chr1 (13-59)||(17968513-17968559)
chr1 (12-58)||(37717839-37717885)
chr1 (13-59)||(45230128-45230174)
chr1 (25-59)||(45664686-45664720)
chr1 (9-56)||(5683428-5683476)
chr1 (27-59)||(12868432-12868464)
chr1 (27-59)||(12869713-12869745)
[»] scaffold0085 (2 HSPs)
scaffold0085 (12-59)||(39895-39942)
scaffold0085 (9-59)||(39420-39470)
[»] chr8 (7 HSPs)
chr8 (12-59)||(12734172-12734219)
chr8 (12-59)||(29917581-29917628)
chr8 (12-59)||(29917104-29917151)
chr8 (13-55)||(12734649-12734691)
chr8 (29-58)||(21006010-21006039)
chr8 (141-198)||(40777982-40778039)
chr8 (25-57)||(44148578-44148610)
[»] chr7 (18 HSPs)
chr7 (12-59)||(1244486-1244533)
chr7 (12-59)||(28898028-28898075)
chr7 (12-59)||(33847865-33847912)
chr7 (12-59)||(41298719-41298766)
chr7 (12-59)||(18443652-18443699)
chr7 (12-58)||(18443176-18443222)
chr7 (13-59)||(41298243-41298289)
chr7 (12-59)||(29784422-29784469)
chr7 (12-59)||(33848340-33848387)
chr7 (13-59)||(884681-884727)
chr7 (13-59)||(1244010-1244056)
chr7 (13-59)||(28898505-28898551)
chr7 (12-58)||(29783935-29783981)
chr7 (12-59)||(22954045-22954092)
chr7 (20-59)||(30939616-30939655)
chr7 (17-58)||(18152929-18152970)
chr7 (29-58)||(28838525-28838554)
chr7 (29-57)||(11974947-11974975)
[»] scaffold0009 (2 HSPs)
scaffold0009 (17-58)||(107895-107936)
scaffold0009 (9-59)||(107989-108040)
[»] scaffold0177 (1 HSPs)
scaffold0177 (25-59)||(25899-25933)
[»] scaffold0148 (1 HSPs)
scaffold0148 (29-59)||(33055-33085)


Alignment Details
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 32115370 - 32115244
Alignment:
Q  106 aagaggccaaaacaaaatctgttaacatacctttctttaaagcaaactgtgtgactaaaagagattaaaaagcgtcaataatacaagaaacaagcacaaa 205  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  32115370 aagaggccaaaacaaaatatgttaacatacctctctttaaagcaaactgtgtgactaaaagagattaaaaagtgtcaataatacaagaaacgagcacaaa 32115271  T
Q  206 actaaaaacaaattacacagtgattaa 232  Q
    |||||||||||||||||||||||||||    
T  32115270 actaaaaacaaattacacagtgattaa 32115244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 28957360 - 28957310
Alignment:
Q  9 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28957360 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 28957310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 31227928 - 31227878
Alignment:
Q  9 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31227928 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 31227878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 2669481 - 2669528
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2669481 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 2669528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 28957785 - 28957832
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28957785 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 28957832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 12107754 - 12107708
Alignment:
Q  10 attattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaa 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  12107754 attattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaa 12107708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 30546189 - 30546236
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  30546189 tattctcaaaatcgcgcaaaatgtagggaccaaaaacatatttaaccc 30546236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 40841508 - 40841461
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  40841508 tattcttaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 40841461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 43980032 - 43980079
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  43980032 tattctcaaaatcgcgcaaaatgtagggaccaaaaacatatttaaccc 43980079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 31228353 - 31228399
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaacc 58  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  31228353 tattctcaaaatcgcgtaaaatgtagggatcaaaaacatatttaacc 31228399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 12922688 - 12922641
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||    
T  12922688 tattctcaaaattgcgcaaaatgtagggaccaaaaacatatttaaccc 12922641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 28505255 - 28505208
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||    
T  28505255 tattctcaaaatcgtgcaaaatgtagggaccaaaaacatatttaaccc 28505208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 38026150 - 38026197
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||    
T  38026150 tattctcaaaattgcgtaaaatgtaggaaccaaaaacatatttaaccc 38026197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 40841936 - 40841983
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||    
T  40841936 tattcttaaaatcgcgtaaaatgtagggaccaaaaacataattaaccc 40841983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 38025722 - 38025676
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaacc 58  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  38025722 tattctcaaaattgcgtaaaatgtagggaccaaagacatatttaacc 38025676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 55347607 - 55347563
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaa 56  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||    
T  55347607 tattctcaaaattgcgtaaaatgtagggaccaaaaatatatttaa 55347563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 789941 - 789894
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  789941 tattttcaaaattgcgcaaaatgtagggaccaaaaacatatttaaccc 789894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 1317535 - 1317582
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  1317535 tattttcaaaatcgcgcaaaatgtaggaaccaaaaacatatttaaccc 1317582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 21235074 - 21235027
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||| ||||||||| | |||||||||||||||||||||||||||||||    
T  21235074 tattatcaaaatcgtgcaaaatgtagggaccaaaaacatatttaaccc 21235027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 46262681 - 46262634
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  46262681 tattttcaaaattgcgcaaaatgtagggaccaaaaacatatttaaccc 46262634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 1317105 - 1317059
Alignment:
Q  13 attctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||| | |||| ||||||||||||||||||||||||||    
T  1317105 attctcaaaatcgtgcaaaacgtagggaccaaaaacatatttaaccc 1317059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 30545758 - 30545712
Alignment:
Q  13 attctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||| | |||| ||||||||||||||||||||||||||    
T  30545758 attctcaaaatcgtgcaaaacgtagggaccaaaaacatatttaaccc 30545712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 46263111 - 46263157
Alignment:
Q  13 attctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||| | |||| ||||||||||||||||||||||||||    
T  46263111 attctcaaaatcgtgcaaaacgtagggaccaaaaacatatttaaccc 46263157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 2669053 - 2669006
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||| || |||||| || ||||||||||||||||||||||    
T  2669053 tattctcaaaattgcataaaatataaggaccaaaaacatatttaaccc 2669006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 55348012 - 55348051
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacata 51  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  55348012 tattcttaaaatcgcgtaaaatgttgggaccaaaaacata 55348051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 790371 - 790417
Alignment:
Q  13 attctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||| | ||||  |||||||||||||||||||||||||    
T  790371 attctcaaaatcgtgcaaaacttagggaccaaaaacatatttaaccc 790417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 59
Target Start/End: Complemental strand, 5544986 - 5544956
Alignment:
Q  29 aaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||    
T  5544986 aaaatgtagggaccaaaaacatatttaaccc 5544956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 12923118 - 12923164
Alignment:
Q  13 attctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||   ||||||||||||||||||||||||| |||||    
T  12923118 attctcaaaatcgtacaaaatgtagggaccaaaaacatattgaaccc 12923164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 26168280 - 26168310
Alignment:
Q  29 aaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||    
T  26168280 aaaatgtagggaccaaaaacatatttaaccc 26168310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 43979602 - 43979556
Alignment:
Q  13 attctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||| | ||||  |||||||||||||||||||||||||    
T  43979602 attctcaaaatcgtgcaaaacatagggaccaaaaacatatttaaccc 43979556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 47058568 - 47058598
Alignment:
Q  29 aaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||    
T  47058568 aaaatgtagggaccaaaaacatatttaaccc 47058598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 12108332 - 12108377
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaac 57  Q
    ||||||||||||||  |||||| |||||||||| ||||||||||||    
T  12108332 tattctcaaaatcgtataaaatttagggaccaataacatatttaac 12108377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 20824635 - 20824685
Alignment:
Q  9 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20824635 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 20824685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 14257193 - 14257146
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14257193 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 14257146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 15147767 - 15147717
Alignment:
Q  9 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15147767 gattattctctaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 15147717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 20824210 - 20824163
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  20824210 tattctcaaaatcgtgtaaaatgtagggaccaaaaacatatttaaccc 20824163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 33107404 - 33107451
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  33107404 tattctcaaaatcgcgcaaaatgtagggaccaaaaacatatttaaccc 33107451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 34984587 - 34984634
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  34984587 tattctcaaaatcgcgcaaaatgtagggaccaaaaacatatttaaccc 34984634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 6162731 - 6162776
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaac 57  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  6162731 tattctcaaaatcgcgcaaaatgtagggaccaaaaacatatttaac 6162776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 14257621 - 14257668
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||| || |||||| |||||||||||||||||||||||||    
T  14257621 tattctcaaaattgcataaaatatagggaccaaaaacatatttaaccc 14257668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 15148192 - 15148239
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||| ||||||| ||||||||| |||||||||||||||||||||||||    
T  15148192 tattatcaaaattgcgtaaaatatagggaccaaaaacatatttaaccc 15148239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 33106974 - 33106931
Alignment:
Q  13 attctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaa 56  Q
    ||||||||||||| | |||| |||||||||||||||||||||||    
T  33106974 attctcaaaatcgtgcaaaacgtagggaccaaaaacatatttaa 33106931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 8709649 - 8709678
Alignment:
Q  29 aaaatgtagggaccaaaaacatatttaacc 58  Q
    ||||||||||||||||||||||||||||||    
T  8709649 aaaatgtagggaccaaaaacatatttaacc 8709678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 14712859 - 14712830
Alignment:
Q  29 aaaatgtagggaccaaaaacatatttaacc 58  Q
    ||||||||||||||||||||||||||||||    
T  14712859 aaaatgtagggaccaaaaacatatttaacc 14712830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 5974795 - 5974763
Alignment:
Q  26 cgtaaaatgtagggaccaaaaacatatttaacc 58  Q
    ||||||||||| |||||||||||||||||||||    
T  5974795 cgtaaaatgtaaggaccaaaaacatatttaacc 5974763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 5746810 - 5746760
Alignment:
Q  9 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5746810 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 5746760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 28641210 - 28641160
Alignment:
Q  9 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28641210 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 28641160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 31162892 - 31162942
Alignment:
Q  9 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31162892 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 31162942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 5747235 - 5747282
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5747235 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 5747282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 6543461 - 6543414
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6543461 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 6543414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 21949446 - 21949400
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaacc 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21949446 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaacc 21949400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 28641635 - 28641682
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  28641635 tattctcaaaatcgcgtaaaatgtagggaccaaacacatatttaaccc 28641682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 31162467 - 31162420
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31162467 tattctcaaaatcacgtaaaatgtagggaccaaaaacatatttaaccc 31162420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 39402258 - 39402211
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  39402258 tattctcaaaatcgcgcaaaatgtagggaccaaaaacatatttaaccc 39402211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 39402688 - 39402735
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  39402688 tattctcaaaatcgtgtaaaatgtagggaccaaaaacatatttaaccc 39402735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 3879244 - 3879294
Alignment:
Q  9 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  3879244 gattattctcaaaatcgcgcaaaatgtagggaccaaaaatatatttaaccc 3879294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 6543886 - 6543935
Alignment:
Q  9 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6543886 gattattctcaaaatcgcgtaaaatgta-ggaccaaaaacatatttaaccc 6543935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 31093470 - 31093517
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||    
T  31093470 tattttcaaaatcgcgcaaaatgtagggaccaaaaacatatttaaccc 31093517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 21949874 - 21949919
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaac 57  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||    
T  21949874 tattcttaaaatcgcgtaaaatgtagggaccaaaaacataattaac 21949919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 14625161 - 14625121
Alignment:
Q  19 aaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  14625161 aaaattgcgtaaaatgtagggaccaaaaacatatttaaccc 14625121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 3191844 - 3191797
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||| | ||||||||||||| |||||||||||||||||    
T  3191844 tattctcaaaatcgtgcaaaatgtagggactaaaaacatatttaaccc 3191797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 3192274 - 3192321
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||  ||||| |||||||||||||||||||||||||    
T  3192274 tattctcaaaatcgcacaaaatatagggaccaaaaacatatttaaccc 3192321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 3878817 - 3878771
Alignment:
Q  13 attctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||| | |||| ||||||||||||||||||||||||||    
T  3878817 attctcaaaatcgtgcaaaacgtagggaccaaaaacatatttaaccc 3878771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 87149 - 87179
Alignment:
Q  29 aaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||    
T  87149 aaaatgtagggaccaaaaacatatttaaccc 87179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 59
Target Start/End: Complemental strand, 119039 - 119009
Alignment:
Q  29 aaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||    
T  119039 aaaatgtagggaccaaaaacatatttaaccc 119009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 120019 - 120049
Alignment:
Q  29 aaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||    
T  120019 aaaatgtagggaccaaaaacatatttaaccc 120049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 31093040 - 31092994
Alignment:
Q  13 attctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||| | |||| || |||||||||||||||||||||||    
T  31093040 attctcaaaatcgtgcaaaacgttgggaccaaaaacatatttaaccc 31092994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 59
Target Start/End: Complemental strand, 35373650 - 35373620
Alignment:
Q  29 aaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||    
T  35373650 aaaatgtagggaccaaaaacatatttaaccc 35373620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 13987488 - 13987456
Alignment:
Q  26 cgtaaaatgtagggaccaaaaacatatttaacc 58  Q
    ||||||||||| |||||||||||||||||||||    
T  13987488 cgtaaaatgtaaggaccaaaaacatatttaacc 13987456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 19352330 - 19352298
Alignment:
Q  27 gtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||| ||||||||||||||||||||    
T  19352330 gtaaaatgtaggaaccaaaaacatatttaaccc 19352298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 35294882 - 35294850
Alignment:
Q  25 gcgtaaaatgtagggaccaaaaacatatttaac 57  Q
    ||||||||||||||||| |||||||||||||||    
T  35294882 gcgtaaaatgtagggactaaaaacatatttaac 35294850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 35295672 - 35295704
Alignment:
Q  25 gcgtaaaatgtagggaccaaaaacatatttaac 57  Q
    ||||||||||||||||| |||||||||||||||    
T  35295672 gcgtaaaatgtagggactaaaaacatatttaac 35295704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 46690153 - 46690203
Alignment:
Q  9 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46690153 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 46690203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 36899300 - 36899253
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36899300 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 36899253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 4199929 - 4199976
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  4199929 tattctcaaaatcgcgcaaaatgtagggaccaaaaacatatttaaccc 4199976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 27475436 - 27475389
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  27475436 tattctcaaaatcgcgcaaaatgtagggaccaaaaacatatttaaccc 27475389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 34949802 - 34949755
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  34949802 tattctcaaaatcgcgcaaaatgtagggaccaaaaacatatttaaccc 34949755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 42606326 - 42606279
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  42606326 tattctcaaaatcgcgtaaaatgtagggaccaaaaacaaatttaaccc 42606279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 45539683 - 45539730
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  45539683 tattcttaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 45539730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 2388678 - 2388636
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatattt 54  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  2388678 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatattt 2388636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 4199499 - 4199452
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||    
T  4199499 tattctcaaaatcgtgcaaaatgtagggaccaaaaacatatttaaccc 4199452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 42606754 - 42606801
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||    
T  42606754 tattctcaaaattgcataaaatgtagggaccaaaaacatatttaaccc 42606801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 45539255 - 45539208
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||    
T  45539255 tattcttaaaatcgcgtaaaatgtagggaccaaaaacataattaaccc 45539208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 46689728 - 46689681
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  46689728 tattctcaaaatcgcataaaatgtaggaaccaaaaacatatttaaccc 46689681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 2389106 - 2389153
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||| || |||||| |||||||||||||||||||||||||    
T  2389106 tattctcaaaattgcataaaatatagggaccaaaaacatatttaaccc 2389153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 22407317 - 22407364
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  22407317 tattttcaaaattgcgcaaaatgtagggaccaaaaacatatttaaccc 22407364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 36899728 - 36899775
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||| || |||||| |||||||||||||||||||||||||    
T  36899728 tattctcaaaattgcataaaatatagggaccaaaaacatatttaaccc 36899775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 27475774 - 27475820
Alignment:
Q  13 attctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||| ||||||  |||||||||||||||||||||||||    
T  27475774 attctcaaaatcgtgtaaaacttagggaccaaaaacatatttaaccc 27475820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 59
Target Start/End: Complemental strand, 35300774 - 35300743
Alignment:
Q  28 taaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||||||||||||||||||||||    
T  35300774 taaaatgtagggaccaaaaacatatttaaccc 35300743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 59
Target Start/End: Complemental strand, 20826757 - 20826727
Alignment:
Q  29 aaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||    
T  20826757 aaaatgtagggaccaaaaacatatttaaccc 20826727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 20831162 - 20831192
Alignment:
Q  29 aaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||    
T  20831162 aaaatgtagggaccaaaaacatatttaaccc 20831192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 22406887 - 22406841
Alignment:
Q  13 attctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||| | |||| ||| ||||||||||||||||||||||    
T  22406887 attctcaaaatcgtgcaaaacgtaaggaccaaaaacatatttaaccc 22406841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 34950232 - 34950278
Alignment:
Q  13 attctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||| | | |||| ||||||||||||||||||||||||||    
T  34950232 attctcaaaattgtgcaaaacgtagggaccaaaaacatatttaaccc 34950278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 9218022 - 9217994
Alignment:
Q  29 aaaatgtagggaccaaaaacatatttaac 57  Q
    |||||||||||||||||||||||||||||    
T  9218022 aaaatgtagggaccaaaaacatatttaac 9217994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 27013623 - 27013583
Alignment:
Q  17 tcaaaatcgcgtaaaatgtagggaccaaaaacatatttaac 57  Q
    |||||||| || |||||||| ||||||||||||||||||||    
T  27013623 tcaaaatcacgcaaaatgtaaggaccaaaaacatatttaac 27013583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 11450805 - 11450755
Alignment:
Q  9 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11450805 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 11450755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 27378120 - 27378170
Alignment:
Q  9 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27378120 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 27378170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 1804278 - 1804231
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1804278 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 1804231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 1804706 - 1804753
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1804706 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 1804753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 6476133 - 6476086
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6476133 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 6476086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 6476561 - 6476608
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6476561 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 6476608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 11451230 - 11451277
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11451230 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 11451277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 27377695 - 27377648
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27377695 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 27377648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 3854541 - 3854588
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  3854541 tattctcaaaatcgcgcaaaatgtagggaccaaaaacatatttaaccc 3854588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 22704428 - 22704475
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  22704428 tattctcaaaatcgcgcaaaatgtagggaccaaaaacatatttaaccc 22704475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 39096997 - 39097047
Alignment:
Q  9 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  39096997 gattattctcaaaatcgtgcaaaatgtagggaccaaaaacatatttaaccc 39097047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 12090169 - 12090216
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||    
T  12090169 tattctcaaaatcgcgcaaaatgcagggaccaaaaacatatttaaccc 12090216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 26525938 - 26525984
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaacc 58  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||    
T  26525938 tattatcaaaatcgcgcaaaatgtagggaccaaaaacatatttaacc 26525984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 39096570 - 39096523
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||  ||||| |||||||||||||||||||||||||    
T  39096570 tattctcaaaatcgcacaaaatatagggaccaaaaacatatttaaccc 39096523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 3854111 - 3854065
Alignment:
Q  13 attctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||| | |||| ||||||||||||||||||||||||||    
T  3854111 attctcaaaatcgtgcaaaacgtagggaccaaaaacatatttaaccc 3854065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 26525505 - 26525462
Alignment:
Q  15 tctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaacc 58  Q
    ||||||||||| | |||| |||||||||||||||||||||||||    
T  26525505 tctcaaaatcgtgcaaaacgtagggaccaaaaacatatttaacc 26525462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 34037855 - 34037808
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||| ||||| ||| |||||||||| ||||||||||    
T  34037855 tattctcaaaatcgcgcaaaatatagagaccaaaaacgtatttaaccc 34037808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 59
Target Start/End: Complemental strand, 7083724 - 7083694
Alignment:
Q  29 aaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||    
T  7083724 aaaatgtagggaccaaaaacatatttaaccc 7083694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 59
Target Start/End: Complemental strand, 10708052 - 10708022
Alignment:
Q  29 aaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||    
T  10708052 aaaatgtagggaccaaaaacatatttaaccc 10708022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 12089739 - 12089693
Alignment:
Q  13 attctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||| | | |||| ||||||||||||||||||||||||||    
T  12089739 attctcaaaattgtgcaaaacgtagggaccaaaaacatatttaaccc 12089693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 24093432 - 24093474
Alignment:
Q  17 tcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||| || |||||||||||||||| |||||||||||||||||    
T  24093432 tcaaagtcacgtaaaatgtagggacgaaaaacatatttaaccc 24093474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 59
Target Start/End: Complemental strand, 32861015 - 32860985
Alignment:
Q  29 aaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||    
T  32861015 aaaatgtagggaccaaaaacatatttaaccc 32860985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 39947147 - 39947177
Alignment:
Q  29 aaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||    
T  39947147 aaaatgtagggaccaaaaacatatttaaccc 39947177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 59
Target Start/End: Complemental strand, 44930012 - 44929982
Alignment:
Q  29 aaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||    
T  44930012 aaaatgtagggaccaaaaacatatttaaccc 44929982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 44934744 - 44934774
Alignment:
Q  29 aaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||    
T  44934744 aaaatgtagggaccaaaaacatatttaaccc 44934774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 2035639 - 2035607
Alignment:
Q  27 gtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||| |||||||||||||||||||||||||    
T  2035639 gtaaaatatagggaccaaaaacatatttaaccc 2035607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 10711061 - 10711093
Alignment:
Q  27 gtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||| |||||||||||||||||||||||||    
T  10711061 gtaaaatatagggaccaaaaacatatttaaccc 10711093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 32266954 - 32267004
Alignment:
Q  9 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32266954 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 32267004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 32266529 - 32266482
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32266529 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 32266482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 47410897 - 47410944
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  47410897 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 47410944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 40124547 - 40124597
Alignment:
Q  9 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40124547 gattattctcaaaatcgcgtaaaatgtagggaccaaaaatatatttaaccc 40124597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 9122731 - 9122684
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  9122731 tattctcaaaatcgcgtaaaatgtggggaccaaaaacatatttaaccc 9122684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 17968083 - 17968036
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  17968083 tattctcaaaatcgcgcaaaatgtagggaccaaaaacatatttaaccc 17968036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 45230604 - 45230651
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  45230604 tattctcaaaatcgcgcaaaatgtagggaccaaaaacatatttaaccc 45230651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 46802368 - 46802321
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  46802368 tattctcaaaatcgcgtaaaatgtggggaccaaaaacatatttaaccc 46802321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 30428148 - 30428194
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaacc 58  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  30428148 tattctcaaaatcgcgcaaaatgtagggaccaaaaacatatttaacc 30428194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 9123159 - 9123205
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaacc 58  Q
    |||||||||||| || |||||||||||||||||||||||||||||||    
T  9123159 tattctcaaaattgcataaaatgtagggaccaaaaacatatttaacc 9123205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 40124122 - 40124075
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||  |||||||||| ||||||||||||||||||||||    
T  40124122 tattctcaaaatcaagtaaaatgtaaggaccaaaaacatatttaaccc 40124075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 47410469 - 47410422
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||| || |||||| |||||||||||||||||||||||||    
T  47410469 tattctcaaaattgcataaaatatagggaccaaaaacatatttaaccc 47410422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 30427718 - 30427672
Alignment:
Q  13 attctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||| | |||| ||||||||||||||||||||||||||    
T  30427718 attctcaaaatcgtgcaaaacgtagggaccaaaaacatatttaaccc 30427672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 59
Target Start/End: Original strand, 46802812 - 46802843
Alignment:
Q  28 taaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||||||||||||||||||||||    
T  46802812 taaaatgtagggaccaaaaacatatttaaccc 46802843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 56
Target Start/End: Original strand, 4288324 - 4288354
Alignment:
Q  26 cgtaaaatgtagggaccaaaaacatatttaa 56  Q
    |||||||||||||||||||||||||||||||    
T  4288324 cgtaaaatgtagggaccaaaaacatatttaa 4288354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 17968513 - 17968559
Alignment:
Q  13 attctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||| | |||| ||| ||||||||||||||||||||||    
T  17968513 attctcaaaatcgtgcaaaacgtatggaccaaaaacatatttaaccc 17968559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 37717839 - 37717885
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaacc 58  Q
    |||| ||||| | ||||||||||||||||| ||||||||||||||||    
T  37717839 tattttcaaagttgcgtaaaatgtagggactaaaaacatatttaacc 37717885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 45230174 - 45230128
Alignment:
Q  13 attctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||| | | |||| ||||||||||||||||||||||||||    
T  45230174 attctcaaaatagtgcaaaacgtagggaccaaaaacatatttaaccc 45230128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 45664720 - 45664686
Alignment:
Q  25 gcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||||||| |||||||||||||||||    
T  45664720 gcgtaaaatgtagggactaaaaacatatttaaccc 45664686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 5683428 - 5683476
Alignment:
Q  9 gattattct-caaaatcgcgtaaaatgtagggaccaaaaacatatttaa 56  Q
    ||||||||| |||| || |||||||||||||||| ||||||||||||||    
T  5683428 gattattcttcaaagtcacgtaaaatgtagggactaaaaacatatttaa 5683476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 12868464 - 12868432
Alignment:
Q  27 gtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||| ||||||||||||||    
T  12868464 gtaaaatgtagggaccaataacatatttaaccc 12868432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Original strand, 12869713 - 12869745
Alignment:
Q  27 gtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||| |||||||||||||||||||||||||    
T  12869713 gtaaaatatagggaccaaaaacatatttaaccc 12869745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 39895 - 39942
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39895 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 39942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 39470 - 39420
Alignment:
Q  9 gattattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39470 gattattctcaaaatcgcataaaatgtagggaccaaaaacatatttaaccc 39420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 12734219 - 12734172
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  12734219 tattctcaaaatcgcgcaaaatgtagggaccaaaaacatatttaaccc 12734172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 29917581 - 29917628
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||    
T  29917581 tattctcaaaatcgtgcaaaatgtagggaccaaaaacatatttaaccc 29917628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 29917151 - 29917104
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||| |||| ||||||| ||||||||||||||||||    
T  29917151 tattctcaaaatcgcgcaaaacgtagggatcaaaaacatatttaaccc 29917104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 12734649 - 12734691
Alignment:
Q  13 attctcaaaatcgcgtaaaatgtagggaccaaaaacatattta 55  Q
    ||||||||||||| | |||| ||||||||||||||||||||||    
T  12734649 attctcaaaatcgtgcaaaacgtagggaccaaaaacatattta 12734691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 21006010 - 21006039
Alignment:
Q  29 aaaatgtagggaccaaaaacatatttaacc 58  Q
    ||||||||||||||||||||||||||||||    
T  21006010 aaaatgtagggaccaaaaacatatttaacc 21006039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 40777982 - 40778039
Alignment:
Q  141 tttaaagcaaactgtgtgactaaaagagattaaaaagcgtcaataatacaagaaacaa 198  Q
    |||||||||||  ||||| |||||||||||||||| | ||||| |||||||| |||||    
T  40777982 tttaaagcaaaaggtgtgcctaaaagagattaaaatgtgtcaacaatacaagtaacaa 40778039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 44148610 - 44148578
Alignment:
Q  25 gcgtaaaatgtagggaccaaaaacatatttaac 57  Q
    ||||||||||||||||| |||||||||||||||    
T  44148610 gcgtaaaatgtagggactaaaaacatatttaac 44148578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 1244486 - 1244533
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  1244486 tattctcaaaatcgcgcaaaatgtagggaccaaaaacatatttaaccc 1244533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 28898075 - 28898028
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  28898075 tattctcaaaatcgcgcaaaatgtagggaccaaaaacatatttaaccc 28898028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 33847912 - 33847865
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  33847912 tattctcaaaatcgcgtaaaatatagggaccaaaaacatatttaaccc 33847865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 41298719 - 41298766
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  41298719 tattctcaaaatcgcgcaaaatgtagggaccaaaaacatatttaaccc 41298766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 18443652 - 18443699
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||    
T  18443652 tattctcaaaatcgcgcaaaatgtaaggaccaaaaacatatttaaccc 18443699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 18443222 - 18443176
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaacc 58  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||    
T  18443222 tattctcaaaatcgtgcaaaatgtagggaccaaaaacatatttaacc 18443176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 41298289 - 41298243
Alignment:
Q  13 attctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||    
T  41298289 attctcaaaatcgtgcaaaatgtagggaccaaaaacatatttaaccc 41298243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 29784422 - 29784469
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||| | |||| ||||||||||||||||||||||||||    
T  29784422 tattctcaaaatcgtgcaaaacgtagggaccaaaaacatatttaaccc 29784469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 33848340 - 33848387
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||| |||||||||||||||||||||| |||||||||| |||||||    
T  33848340 tattcttaaaatcgcgtaaaatgtagggaacaaaaacataattaaccc 33848387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 884727 - 884681
Alignment:
Q  13 attctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||| | |||| ||||||||||||||||||||||||||    
T  884727 attctcaaaatcgtgcaaaacgtagggaccaaaaacatatttaaccc 884681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 1244056 - 1244010
Alignment:
Q  13 attctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||| | |||| ||||||||||||||||||||||||||    
T  1244056 attctcaaaatcgtgcaaaacgtagggaccaaaaacatatttaaccc 1244010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 28898505 - 28898551
Alignment:
Q  13 attctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||| | |||| ||||||||||||||||||||||||||    
T  28898505 attctcaaaatcgtgcaaaacgtagggaccaaaaacatatttaaccc 28898551  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 29783981 - 29783935
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaacc 58  Q
    |||||||||||||||  ||||||||||||| ||||||||||||||||    
T  29783981 tattctcaaaatcgcacaaaatgtagggactaaaaacatatttaacc 29783935  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 22954092 - 22954045
Alignment:
Q  12 tattctcaaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||| || |||||| ||||||| |||||||||||||||||    
T  22954092 tattctcaaaattgcataaaatatagggactaaaaacatatttaaccc 22954045  T

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Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 30939616 - 30939655
Alignment:
Q  20 aaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  30939616 aaatggcgtaaaatgtagggactaaaaacatatttaaccc 30939655  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 18152970 - 18152929
Alignment:
Q  17 tcaaaatcgcgtaaaatgtagggaccaaaaacatatttaacc 58  Q
    ||||| || ||| |||||||||||||||||||||||||||||    
T  18152970 tcaaagtcacgtcaaatgtagggaccaaaaacatatttaacc 18152929  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 28838554 - 28838525
Alignment:
Q  29 aaaatgtagggaccaaaaacatatttaacc 58  Q
    ||||||||||||||||||||||||||||||    
T  28838554 aaaatgtagggaccaaaaacatatttaacc 28838525  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 11974947 - 11974975
Alignment:
Q  29 aaaatgtagggaccaaaaacatatttaac 57  Q
    |||||||||||||||||||||||||||||    
T  11974947 aaaatgtagggaccaaaaacatatttaac 11974975  T

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Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 107936 - 107895
Alignment:
Q  17 tcaaaatcgcgtaaaatgtagggaccaaaaacatatttaacc 58  Q
    |||||||| || ||||||||||||||||||||||||||||||    
T  107936 tcaaaatcacggaaaatgtagggaccaaaaacatatttaacc 107895  T

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Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 107989 - 108040
Alignment:
Q  9 gattattct-caaaatcgcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||| |||| || || |||||||||||||||||||||||||||||||    
T  107989 gattattcttcaaagtcacgcaaaatgtagggaccaaaaacatatttaaccc 108040  T

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Target: scaffold0177 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 25899 - 25933
Alignment:
Q  25 gcgtaaaatgtagggaccaaaaacatatttaaccc 59  Q
    ||||||||||||||||| |||||||||||||||||    
T  25899 gcgtaaaatgtagggactaaaaacatatttaaccc 25933  T

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Target: scaffold0148 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 33055 - 33085
Alignment:
Q  29 aaaatgtagggaccaaaaacatatttaaccc 59  Q
    |||||||||||||||||||||||||||||||    
T  33055 aaaatgtagggaccaaaaacatatttaaccc 33085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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