View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1793_low_7 (Length: 212)
Name: NF1793_low_7
Description: NF1793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1793_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 12 - 195
Target Start/End: Complemental strand, 21854972 - 21854789
Alignment:
| Q |
12 |
gagatgaaagagaagagaaaggagaagacattaacaaccgtcgaagtctaagttagggttacatgaaaatatttatacattcaaatcagtatgtgtgcaa |
111 |
Q |
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| T |
21854972 |
gagatggaagagaagagaaaggagacgacattaacaaccgtcgaagtctaagttaaggttacatgaaaatatttatacattcaaatcagtatgagtgcaa |
21854873 |
T |
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| Q |
112 |
aaaatgatagtttttagtatacattgtgtgtactttatttttgtgctgaaggggtccttttataagcttggttacagattaacg |
195 |
Q |
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| T |
21854872 |
aaaatgatagtttttagtatacattgtgtgtactttatttttgtgctgaaggggtccttttataagcttggttacagattaacg |
21854789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 38 - 194
Target Start/End: Complemental strand, 21834437 - 21834281
Alignment:
| Q |
38 |
gacattaacaaccgtcgaagtctaagttagggttacatgaaaatatttatacattcaaatcagtatgtgtgcaaaaaatgatagtttttagtatacattg |
137 |
Q |
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| T |
21834437 |
gacaataacaaccgtcaaaatttaagttaggggtacatgtaaatatttcgacattcaaatcagtatgagtgcaaaaaatgatagtttttagtatacattg |
21834338 |
T |
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| Q |
138 |
tgtgtactttatttttgtgctgaaggggtccttttataagcttggttacagattaac |
194 |
Q |
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| T |
21834337 |
cgtgtactttgcttttgtgctgaaggggtcgttttataagcttggttacagagtaac |
21834281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 38 - 194
Target Start/End: Complemental strand, 21859452 - 21859295
Alignment:
| Q |
38 |
gacattaacaaccgtcgaagtctaagttagggt-tacatgaaaatatttatacattcaaatcagtatgtgtgcaaaaaatgatagtttttagtatacatt |
136 |
Q |
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| T |
21859452 |
gacaataacaaccgtcgaaatgtaagttagggggtacatgtaaatatttagacattcaagtaagtatgagtgcaaaaattgagagtttttagtttatatt |
21859353 |
T |
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| Q |
137 |
gtgtgtactttatttttgtgctgaaggggtccttttataagcttggttacagattaac |
194 |
Q |
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| T |
21859352 |
ttgtgtacttttcttttgtgctgaaggggctcttttatatacttggttacagagtaac |
21859295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 38 - 194
Target Start/End: Complemental strand, 21843810 - 21843654
Alignment:
| Q |
38 |
gacattaacaaccgtcgaagtctaagttagggt-tacatgaaaatatttatacattcaaatcagtatgtgtgcaaaaaatgatagtttttagtatacatt |
136 |
Q |
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| T |
21843810 |
gacaataacgaccgtcgaaatgtaagttagggggtacatgtaaatatttagacattcaagtaagtataagtgcaaaaaatgagagtttttagtttatatt |
21843711 |
T |
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| Q |
137 |
gtgtgtactttatttttgtgctgaaggggtccttttataagcttggttacagattaac |
194 |
Q |
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| T |
21843710 |
gtgtgtacttttgttctgtgctaaagggg-ctttttatatacttggttacagagtaac |
21843654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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