View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17940_high_1 (Length: 466)
Name: NF17940_high_1
Description: NF17940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17940_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 25609683 - 25609972
Alignment:
| Q |
18 |
gttgtaagatcaatttctgttactaaactttggagaaaaacataaccagttgttctgcttgtcaattttgaaaacaaaccagactgcttgaaccgtcctg |
117 |
Q |
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| T |
25609683 |
gttgtaagatcaatttctgttactaaactttggagaaaaacataaccagttgttctgcttgtcaatttcgaaaacaaaccagactgcttgaaccgtcctg |
25609782 |
T |
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| Q |
118 |
gaatgggagaatatataagtgatactcttcataaatgattttacaaggctatgctggttgaaattaacatttgacatggctgatatttttgttaattcaa |
217 |
Q |
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| T |
25609783 |
gaatgggagaatatataattgatactcttcatagatgattttacaagggtatgctgattgaaattaacatttgacgttgctgatatttttgttaattcaa |
25609882 |
T |
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| Q |
218 |
attttgggttgaaaatcagtgtgaatgcaaaattcaaatgttaagattagataatggaagtgattacacctcagaaaaattcaataagct |
307 |
Q |
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| T |
25609883 |
attttgggttgaaaatcagtgtgaatgcaaaattcaaatgttaagattagataatggaagtgaatacacctcagaaaaattcaataagct |
25609972 |
T |
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