View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17940_high_5 (Length: 280)

Name: NF17940_high_5
Description: NF17940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17940_high_5
NF17940_high_5
[»] chr2 (4 HSPs)
chr2 (17-158)||(27735213-27735354)
chr2 (156-270)||(27734986-27735100)
chr2 (17-158)||(27723971-27724112)
chr2 (179-270)||(27723020-27723111)
[»] chr8 (3 HSPs)
chr8 (17-158)||(14681626-14681765)
chr8 (179-250)||(26092388-26092459)
chr8 (179-232)||(9486796-9486849)


Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 27735354 - 27735213
Alignment:
Q  17 atttgttgcctaagtttaacgttttcgctctcaagatctatgagcatagcttctttgatttatcattttattatctagttttaaggtttaagttatcttt 116  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  27735354 atttgttgcctaagtttaacgttttcgctctcaagatttatgagcatagcttcttcaatttatcattttattatctagttttaaggtttaagttatcttt 27735255  T
Q  117 agtgtaagataaatatttctatggcacattttcattatgttg 158  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27735254 agtgtaagataaatatttctatggcacattttcattatgttg 27735213  T

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Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 156 - 270
Target Start/End: Complemental strand, 27735100 - 27734986
Alignment:
Q  156 ttgtttatgctttctgcgcactatgaattggattctatgaatatttcactatgataccaccagaaaaaacaaaccaacaactttcatctccattccataa 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  27735100 ttgtttatgctttctgcgcactatgaattggattctatgaatatttcactatgataccacaagaaaaaacaaacctacaactttcatctccattccataa 27735001  T
Q  256 aactaaaaacctatg 270  Q
    |||||||||||||||    
T  27735000 aactaaaaacctatg 27734986  T

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Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 27724112 - 27723971
Alignment:
Q  17 atttgttgcctaagtttaacgttttcgctctcaagatctatgagcatagcttctttgatttatcattttattatctagttttaaggtttaagttatcttt 116  Q
    ||||||||| |||| |||| || |||||||| ||||| |||||||||||||||| |||||||| |||| |||||| ||||||||  |||||||| |||||    
T  27724112 atttgttgcttaagcttaatgtattcgctcttaagatttatgagcatagcttctatgatttattatttcattatcaagttttaaaatttaagttctcttt 27724013  T
Q  117 agtgtaagataaatatttctatggcacattttcattatgttg 158  Q
    |||||||||||||| |||||||||||||| || |||||||||    
T  27724012 agtgtaagataaatctttctatggcacatgttaattatgttg 27723971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 27723111 - 27723020
Alignment:
Q  179 tgaattggattctatgaatatttcactatgataccaccagaaaaaacaaaccaacaactttcatctccattccataaaactaaaaacctatg 270  Q
    |||||| |||||| |||||||||||| |||||||||||||||| || | | |||||||||||| |||||||||||||||||| |||||||||    
T  27723111 tgaattagattctttgaatatttcacgatgataccaccagaaataaaatatcaacaactttcacctccattccataaaactagaaacctatg 27723020  T

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Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 14681765 - 14681626
Alignment:
Q  17 atttgttgcctaagtttaacgttttcgctctcaagatctatgagcatagcttctttgatttatcattttattatctagttttaaggtttaagttatcttt 116  Q
    |||||||||||||| |||||||||||||||||||||| || |||||||||| || |||||||||||||||||||| ||  |||||| ||||||| |||||    
T  14681765 atttgttgcctaagcttaacgttttcgctctcaagatttaagagcatagctgctatgatttatcattttattatcaag--ttaaggcttaagttctcttt 14681668  T
Q  117 agtgtaagataaatatttctatggcacattttcattatgttg 158  Q
    |||||||||||||| |||||||| |||||||| ||| |||||    
T  14681667 agtgtaagataaatctttctatgacacattttgattgtgttg 14681626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 26092459 - 26092388
Alignment:
Q  179 tgaattggattctatgaatatttcactatgataccaccagaaaaaacaaaccaacaactttcatctccattc 250  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  26092459 tgaattggattctatgaatatttcactatgataccaccagaaataacaaaccaacaacttgcatctccattc 26092388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 9486849 - 9486796
Alignment:
Q  179 tgaattggattctatgaatatttcactatgataccaccagaaaaaacaaaccaa 232  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9486849 tgaattggattctatgaatatttcactatgataccaccagaaataacaaaccaa 9486796  T

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