View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17940_low_2 (Length: 408)
Name: NF17940_low_2
Description: NF17940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17940_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 14 - 381
Target Start/End: Original strand, 36372612 - 36372979
Alignment:
| Q |
14 |
aacctgtggaactcataaaaattgagtctgggaaaactaccgtagatttcatccatgcacaaaatattcatagtcatttgttatcggacattcggatacg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
36372612 |
aacctgtggaactcataaaaattgagtctgggaaaactatcgtaaatttcatccatgcgcaaaatattcatagtcatttgttatcggacattcggttacg |
36372711 |
T |
|
| Q |
114 |
atcaagacaagctactccggctgattgctccagtttcataagacctggaattgacatatctgtgctatcaagctttgagtacaataaaaattcacgtcaa |
213 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
36372712 |
atcaagagaagctactccggctgattgctccagtttcgtaagacctggaattgacatatctgtgctatcaagctttgaatacaataaaaaatcacgtcaa |
36372811 |
T |
|
| Q |
214 |
tctagcccagtaagttcaatcttcttagttatatatagtttttattaaactacatttcttactctcattcttccgtatacatttatttattattc-ttag |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
36372812 |
tctagcccagtaagttcaatcttcttagttatatatagtttttattaaactacatttcttactctcattcttctgtatacatttatttattattctttag |
36372911 |
T |
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| Q |
313 |
tttattgatatttgtattttttgtaaattgtagatgtcgactgatgctagagtgaattccatacacaga |
381 |
Q |
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| T |
36372912 |
tttattgatatttata-tttttgtaaactgtagatatcgactgatgctagagtgaattccgtacacaga |
36372979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 8732115 - 8731980
Alignment:
| Q |
14 |
aacctgtggaactcataaaaattgagtctgggaaaactaccgtagatttcatccatgcacaaaatattcatagtcatttgttatcggacattcggatacg |
113 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
8732115 |
aacctgtggaactcataaaaattgagtatgggaaaactagcgtaaatttcatccatgcacaaaatattgatagtcgtttgttatcggacattcggatacg |
8732016 |
T |
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| Q |
114 |
atcaagacaagctactccggctgattgctccagttt |
149 |
Q |
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||||||| |||||||| ||||||||||||||||||| |
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| T |
8732015 |
atcaagagaagctactacggctgattgctccagttt |
8731980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 9084002 - 9083867
Alignment:
| Q |
14 |
aacctgtggaactcataaaaattgagtctgggaaaactaccgtagatttcatccatgcacaaaatattcatagtcatttgttatcggacattcggatacg |
113 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
9084002 |
aacctgtggaactcataaaaattgagtatgggaaaactagcgtaaatttcatccatgcacaaaatattgatagtcgtttgttatcggacattcggatacg |
9083903 |
T |
|
| Q |
114 |
atcaagacaagctactccggctgattgctccagttt |
149 |
Q |
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||||||| |||||||| ||||||||||||||||||| |
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| T |
9083902 |
atcaagagaagctactacggctgattgctccagttt |
9083867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 32253404 - 32253313
Alignment:
| Q |
90 |
tttgttatcggacattcggatacgatcaagacaagctactccggctgattgctccagtttcataagacctggaattgacatatctgtgctat |
181 |
Q |
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||||| ||| || ||||||||| ||||||| |||||||| | ||||||||||||| || || ||||||||||||| |||||| |||||| |
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| T |
32253404 |
tttgtcatccgatattcggataagatcaaggaaagctacttcatctgattgctccagctttttacgacctggaattgatatatctatgctat |
32253313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 383
Target Start/End: Original strand, 11415560 - 11415701
Alignment:
| Q |
242 |
ttatatatagtttttattaaactacatttcttactctcattcttccgtatacatttatttattattctt-agtttattgatatttgtattttttgtaaat |
340 |
Q |
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|||||||||||||| |||||||||| |||||| ||||||| || ||| ||||||||| ||||||| ||||||||||||||| ||||||| | |||| |
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| T |
11415560 |
ttatatatagttttcattaaactacgtttctttgtctcattattatatatgcatttatttgctattctttagtttattgatatttatattttt-gcaaat |
11415658 |
T |
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| Q |
341 |
tgtagatgtcgactgatgctagagtgaattccatacacagaca |
383 |
Q |
| |
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||||||||| ||| ||||||||| ||||||||||||||||| |
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| T |
11415659 |
tgtagatgtggacagatgctagaccaaattccatacacagaca |
11415701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 299
Target Start/End: Complemental strand, 8847179 - 8847100
Alignment:
| Q |
220 |
ccagtaagttcaatcttcttagttatatatagtttttattaaactacatttcttactctcattcttccgtatacatttat |
299 |
Q |
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|||||||||| |||||| | | | ||||||| ||||||||||||| |||||||| ||| ||||||| |||||||||||| |
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| T |
8847179 |
ccagtaagtttaatcttttaaatcatatataatttttattaaacttgatttcttagtcttattcttctgtatacatttat |
8847100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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