View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17940_low_3 (Length: 339)

Name: NF17940_low_3
Description: NF17940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17940_low_3
NF17940_low_3
[»] chr3 (5 HSPs)
chr3 (12-323)||(37130829-37131140)
chr3 (236-322)||(37119331-37119417)
chr3 (34-97)||(37124375-37124438)
chr3 (256-323)||(37135256-37135323)
chr3 (106-175)||(37135410-37135479)
[»] chr5 (1 HSPs)
chr5 (258-323)||(1194018-1194083)
[»] chr7 (1 HSPs)
chr7 (261-323)||(31296961-31297023)
[»] chr1 (2 HSPs)
chr1 (106-175)||(20269342-20269411)
chr1 (256-323)||(20269188-20269255)


Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 323
Target Start/End: Original strand, 37130829 - 37131140
Alignment:
Q  12 atgaatatatcttgtatatggcttttatattgaaaatgagaaaatctttcaatatttttgtcactacataatgtactctttatgcttatttccttatgta 111  Q
    ||||||||||||| | | | | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37130829 atgaatatatcttctctgtagtttttatattgaaaatgagaaaatctttcaatatttttgtcactacataatgcactctttatgcttatttccttatgta 37130928  T
Q  112 tccctctgttttcattctttagtatacatattgttgatggctttcacatgatggaacatgaagggtcctcatattgatatgagttccttatctcatagac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37130929 tccctctgttttcattctttagtatacatattgttgatggctttcacatgatggaacatgaagggtcctcatattgatatgagttccttatctcatagac 37131028  T
Q  212 agggtaattaggagcaccataattccatgccacaattgcctctactttcttttcctctgtctttcccacaggaccaacactcaccaattctgcatgacag 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37131029 agggtaattaggagcaccataattccatgccacaattgcctctactttcttttcctctgtctttcccacaggaccaacactcaccaattctgcatgacag 37131128  T
Q  312 aatttctttctt 323  Q
    ||||||||||||    
T  37131129 aatttctttctt 37131140  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 236 - 322
Target Start/End: Original strand, 37119331 - 37119417
Alignment:
Q  236 ccatgccacaattgcctctactttcttttcctctgtctttcccacaggaccaacactcaccaattctgcatgacagaatttctttct 322  Q
    |||||| |||||||||||| |||||||||| ||| ||||| | ||   ||||||||||||||| |||||||||||||||||||||||    
T  37119331 ccatgctacaattgcctcttctttcttttcttctttcttttcaacttcaccaacactcaccaaatctgcatgacagaatttctttct 37119417  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 37124375 - 37124438
Alignment:
Q  34 ttttatattgaaaatgagaaaatctttcaatatttttgtcactacataatgtactctttatgct 97  Q
    ||||||||||||| ||| |||||||||||||||||| ||| ||||||| |||||||||||||||    
T  37124375 ttttatattgaaattgaaaaaatctttcaatattttggtcgctacatagtgtactctttatgct 37124438  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 37135323 - 37135256
Alignment:
Q  256 ctttcttttcctctgtctttcccacaggaccaacactcaccaattctgcatgacagaatttctttctt 323  Q
    |||||||||||||||||||||| || |   ||| ||||||||| ||||||| || |||||||||||||    
T  37135323 ctttcttttcctctgtctttcctactgcttcaatactcaccaaatctgcataaccgaatttctttctt 37135256  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 37135479 - 37135410
Alignment:
Q  106 tatgtatccctctgttttcattctttagtatacatattgttgatggctttcacatgatggaacatgaagg 175  Q
    ||||||| |||||||||||||| ||||  || |||||| | |||| | |||||||||||||||| |||||    
T  37135479 tatgtattcctctgttttcattatttaccatgcatattctagatgacattcacatgatggaacaagaagg 37135410  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 1194083 - 1194018
Alignment:
Q  258 ttcttttcctctgtctttcccacaggaccaacactcaccaattctgcatgacagaatttctttctt 323  Q
    |||||||||||| ||||| ||||   ||||||||||||||||||||||||||||||||||||||||    
T  1194083 ttcttttcctctttcttttccacttcaccaacactcaccaattctgcatgacagaatttctttctt 1194018  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 31296961 - 31297023
Alignment:
Q  261 ttttcctctgtctttcccacaggaccaacactcaccaattctgcatgacagaatttctttctt 323  Q
    ||||||||| ||||| ||||   ||||||||||||||||||||||||||| ||||||||||||    
T  31296961 ttttcctctttcttttccacttcaccaacactcaccaattctgcatgacataatttctttctt 31297023  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 20269411 - 20269342
Alignment:
Q  106 tatgtatccctctgttttcattctttagtatacatattgttgatggctttcacatgatggaacatgaagg 175  Q
    ||||||| |||||||||||||||||||  || |||||| | |||| | |||||||||||||||| |||||    
T  20269411 tatgtattcctctgttttcattctttaccatgcatattctagatgacattcacatgatggaacaagaagg 20269342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 20269255 - 20269188
Alignment:
Q  256 ctttcttttcctctgtctttcccacaggaccaacactcaccaattctgcatgacagaatttctttctt 323  Q
    |||||||||||||||||||||| || |   ||| ||||||||| ||||||| || |||||||||||||    
T  20269255 ctttcttttcctctgtctttcctactgcttcaatactcaccaaatctgcataaccgaatttctttctt 20269188  T

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