View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17940_low_4 (Length: 333)

Name: NF17940_low_4
Description: NF17940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17940_low_4
NF17940_low_4
[»] chr7 (36 HSPs)
chr7 (18-321)||(22932567-22932870)
chr7 (125-238)||(2446308-2446422)
chr7 (125-238)||(30579335-30579449)
chr7 (125-240)||(5273552-5273668)
chr7 (125-238)||(41487362-41487473)
chr7 (125-238)||(5579196-5579310)
chr7 (147-238)||(26459394-26459486)
chr7 (127-238)||(38374563-38374675)
chr7 (125-233)||(41519227-41519335)
chr7 (158-238)||(43215184-43215264)
chr7 (125-236)||(44628146-44628257)
chr7 (125-238)||(15137553-15137667)
chr7 (168-238)||(22760863-22760933)
chr7 (125-238)||(43590907-43591021)
chr7 (187-239)||(48125199-48125251)
chr7 (132-238)||(7801180-7801287)
chr7 (125-238)||(33460384-33460499)
chr7 (125-235)||(43663057-43663168)
chr7 (125-238)||(17040974-17041088)
chr7 (125-238)||(48771938-48772052)
chr7 (185-238)||(42836024-42836077)
chr7 (125-220)||(21558146-21558242)
chr7 (125-236)||(29385705-29385817)
chr7 (158-238)||(39631844-39631924)
chr7 (125-235)||(4566391-4566501)
chr7 (125-239)||(19553453-19553567)
chr7 (187-238)||(25021360-25021411)
chr7 (200-238)||(3280523-3280561)
chr7 (168-238)||(4161288-4161358)
chr7 (125-219)||(25132341-25132435)
chr7 (187-233)||(28236606-28236652)
chr7 (125-238)||(31835192-31835306)
chr7 (125-218)||(33181172-33181266)
chr7 (187-235)||(15905698-15905746)
chr7 (131-238)||(18056743-18056851)
chr7 (199-239)||(39499756-39499796)
[»] scaffold0258 (1 HSPs)
scaffold0258 (125-238)||(15285-15399)
[»] chr6 (12 HSPs)
chr6 (125-238)||(33549104-33549218)
chr6 (125-238)||(31622953-31623067)
chr6 (127-238)||(30127400-30127512)
chr6 (125-240)||(14557960-14558075)
chr6 (168-234)||(10338180-10338246)
chr6 (186-235)||(13441053-13441102)
chr6 (125-219)||(6385881-6385976)
chr6 (187-238)||(12188328-12188379)
chr6 (125-239)||(21418469-21418584)
chr6 (125-238)||(12234469-12234583)
chr6 (185-238)||(22694-22747)
chr6 (138-238)||(14278086-14278186)
[»] chr2 (25 HSPs)
chr2 (125-238)||(42602554-42602668)
chr2 (125-239)||(42327357-42327472)
chr2 (125-238)||(19016031-19016145)
chr2 (125-238)||(37480075-37480189)
chr2 (125-238)||(29503271-29503384)
chr2 (128-238)||(39714992-39715103)
chr2 (125-238)||(7798998-7799111)
chr2 (124-220)||(12086090-12086187)
chr2 (125-237)||(37755933-37756046)
chr2 (158-238)||(19322768-19322848)
chr2 (132-238)||(11251087-11251194)
chr2 (125-239)||(26482092-26482206)
chr2 (125-238)||(1435064-1435177)
chr2 (125-238)||(18825341-18825454)
chr2 (125-230)||(21213777-21213883)
chr2 (126-238)||(19244109-19244222)
chr2 (124-240)||(26545838-26545955)
chr2 (194-238)||(3697431-3697475)
chr2 (126-176)||(37971957-37972008)
chr2 (125-238)||(23052485-23052599)
chr2 (147-239)||(42922413-42922507)
chr2 (133-214)||(4262273-4262354)
chr2 (147-238)||(1729816-1729908)
chr2 (125-153)||(12982458-12982486)
chr2 (187-235)||(30359657-30359705)
[»] chr8 (24 HSPs)
chr8 (128-236)||(3624582-3624690)
chr8 (125-239)||(968361-968476)
chr8 (125-238)||(28783060-28783174)
chr8 (125-218)||(6536540-6536634)
chr8 (125-238)||(8484999-8485113)
chr8 (125-238)||(11793483-11793597)
chr8 (125-238)||(16852340-16852454)
chr8 (128-237)||(29858014-29858124)
chr8 (128-238)||(22268899-22269009)
chr8 (125-238)||(44780076-44780190)
chr8 (128-236)||(2203494-2203603)
chr8 (187-238)||(6530807-6530858)
chr8 (125-239)||(18540297-18540412)
chr8 (125-238)||(3058012-3058125)
chr8 (168-238)||(26688865-26688935)
chr8 (187-239)||(6436580-6436632)
chr8 (131-238)||(23361617-23361725)
chr8 (187-239)||(43969023-43969075)
chr8 (132-238)||(19703456-19703563)
chr8 (137-212)||(40136938-40137012)
chr8 (168-218)||(25389476-25389526)
chr8 (193-238)||(34986102-34986147)
chr8 (125-176)||(31088735-31088787)
chr8 (194-234)||(33692334-33692374)
[»] chr5 (20 HSPs)
chr5 (125-239)||(16773806-16773921)
chr5 (125-238)||(8278237-8278351)
chr5 (125-238)||(30109271-30109384)
chr5 (125-238)||(29075781-29075895)
chr5 (125-239)||(21589287-21589402)
chr5 (125-238)||(14495767-14495881)
chr5 (147-238)||(34984806-34984898)
chr5 (187-238)||(30883223-30883274)
chr5 (125-238)||(17028226-17028340)
chr5 (125-238)||(29692348-29692462)
chr5 (147-238)||(7918453-7918545)
chr5 (187-239)||(16457809-16457861)
chr5 (199-238)||(15057488-15057527)
chr5 (187-238)||(21549162-21549213)
chr5 (176-238)||(18989015-18989077)
chr5 (201-238)||(22737082-22737119)
chr5 (193-238)||(31669055-31669100)
chr5 (124-156)||(4793041-4793073)
chr5 (147-238)||(14285161-14285253)
chr5 (158-238)||(25627057-25627137)
[»] chr4 (27 HSPs)
chr4 (125-238)||(7949416-7949530)
chr4 (125-238)||(51250484-51250598)
chr4 (128-238)||(55427165-55427276)
chr4 (147-238)||(37109335-37109427)
chr4 (125-236)||(40283948-40284060)
chr4 (125-238)||(46295097-46295211)
chr4 (128-238)||(19238542-19238653)
chr4 (125-238)||(37274421-37274536)
chr4 (125-238)||(19680750-19680864)
chr4 (125-238)||(21660106-21660220)
chr4 (125-238)||(21668870-21668984)
chr4 (125-238)||(37720176-37720290)
chr4 (187-234)||(4911257-4911304)
chr4 (125-238)||(5795370-5795485)
chr4 (128-219)||(24234664-24234755)
chr4 (187-238)||(24827825-24827876)
chr4 (187-238)||(29195095-29195146)
chr4 (168-238)||(6606058-6606127)
chr4 (125-155)||(17816593-17816623)
chr4 (125-238)||(28635696-28635810)
chr4 (158-235)||(7292794-7292871)
chr4 (201-238)||(13496241-13496278)
chr4 (132-217)||(19112929-19113014)
chr4 (125-217)||(19531964-19532057)
chr4 (125-230)||(34075516-34075621)
chr4 (202-238)||(9241065-9241101)
chr4 (125-157)||(12793873-12793905)
[»] chr1 (27 HSPs)
chr1 (125-238)||(18037575-18037689)
chr1 (125-217)||(27476733-27476826)
chr1 (125-237)||(44126396-44126509)
chr1 (125-238)||(19940834-19940948)
chr1 (160-234)||(4824975-4825049)
chr1 (125-238)||(50901581-50901695)
chr1 (165-238)||(37046985-37047057)
chr1 (127-238)||(952511-952623)
chr1 (128-235)||(24730387-24730495)
chr1 (124-236)||(17296986-17297100)
chr1 (128-238)||(34228874-34228984)
chr1 (128-238)||(51814494-51814605)
chr1 (168-238)||(19528333-19528403)
chr1 (147-238)||(9165179-9165271)
chr1 (187-238)||(15581166-15581217)
chr1 (125-239)||(31794226-31794341)
chr1 (146-236)||(33700756-33700847)
chr1 (187-238)||(40257399-40257450)
chr1 (125-238)||(10526823-10526937)
chr1 (137-238)||(39012291-39012392)
chr1 (125-238)||(44961765-44961879)
chr1 (193-238)||(1690108-1690153)
chr1 (199-239)||(2219971-2220011)
chr1 (159-235)||(15786317-15786393)
chr1 (147-218)||(30420330-30420402)
chr1 (158-238)||(36371470-36371550)
chr1 (199-239)||(37400273-37400313)
[»] chr3 (35 HSPs)
chr3 (125-238)||(16991542-16991656)
chr3 (125-238)||(10499071-10499185)
chr3 (147-238)||(27093345-27093437)
chr3 (125-220)||(44069776-44069872)
chr3 (158-238)||(46518628-46518708)
chr3 (125-231)||(2667869-2667976)
chr3 (125-231)||(4844473-4844580)
chr3 (125-231)||(4870169-4870276)
chr3 (168-231)||(17554778-17554841)
chr3 (125-238)||(28703366-28703480)
chr3 (125-238)||(36720381-36720495)
chr3 (137-238)||(47810718-47810820)
chr3 (125-238)||(54990703-54990816)
chr3 (125-182)||(5166484-5166540)
chr3 (138-238)||(14186648-14186748)
chr3 (114-238)||(31520557-31520681)
chr3 (187-239)||(2597245-2597297)
chr3 (190-238)||(9832497-9832545)
chr3 (158-242)||(37788461-37788545)
chr3 (199-238)||(8051214-8051253)
chr3 (125-238)||(10445101-10445216)
chr3 (168-238)||(3054994-3055064)
chr3 (125-238)||(14339610-14339724)
chr3 (187-237)||(18316523-18316573)
chr3 (127-236)||(19716199-19716309)
chr3 (204-238)||(24478155-24478189)
chr3 (125-238)||(40268489-40268602)
chr3 (127-220)||(47236935-47237029)
chr3 (143-239)||(4222140-4222237)
chr3 (193-238)||(26871535-26871580)
chr3 (128-240)||(30510164-30510277)
chr3 (187-236)||(42799772-42799821)
chr3 (202-239)||(47079700-47079737)
chr3 (147-235)||(53412948-53413037)
chr3 (158-218)||(32651434-32651494)
[»] scaffold0070 (1 HSPs)
scaffold0070 (172-235)||(38912-38975)
[»] scaffold0172 (1 HSPs)
scaffold0172 (125-238)||(15739-15853)
[»] scaffold0032 (1 HSPs)
scaffold0032 (125-238)||(112282-112396)
[»] scaffold0260 (1 HSPs)
scaffold0260 (201-238)||(15360-15397)
[»] scaffold0517 (1 HSPs)
scaffold0517 (199-239)||(7763-7803)


Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 22932567 - 22932870
Alignment:
Q  18 aaatctatatagtacatgcatttggaaaagtagtgttatgaaatcttatcatatagtcattccatattttgtcacactaatcctcttcctttaaactttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22932567 aaatctatatagtacatgcatttggaaaagtagtgttatgaaatcttatcatatagtcattccatattttgtcacactaatcctcttcctttaaactttt 22932666  T
Q  118 gttctgaaagaagctaaattagcctacctaaattggcaccgagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaatacca 217  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22932667 gttctgaaagaagctaaattagcccacctaaattggcaccgagagattcaaacctgagatcttgaataagagcgcactcccaggtcccaagccaatacca 22932766  T
Q  218 ccataccaacccaagtgggttctcttcctttaaacttagctcagcacaacctatagtatgcttgtttgttccatcaaaaatatcatatctcaagccctta 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22932767 ccataccaacccaagtgggttctcttcctttaaacttagctcagcacaacctatagtatgcttgtttgttccatcaaaaatatcatatctcaagccctta 22932866  T
Q  318 cctt 321  Q
    ||||    
T  22932867 cctt 22932870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 2446422 - 2446308
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| |||||||| ||||||| ||||| || ||| |||||||| ||  | |||| |||||| | ||||||||||||||||| || ||    
T  2446422 aagaagctaaattagcccacctaaatcggcaccggagagaatcgaacttgagatctcgaggaggagcacactcccaagtcccaagccaataccatcagac 2446323  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  2446322 caacccaagtgggtt 2446308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 30579449 - 30579335
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| ||||||||||||||| |||| | || ||||||||| |||||  | | |  |||||| ||||| ||||||||||||||||  |    
T  30579449 aagaagctaaattagcccacctaaattggcaccagagaaaatcgaacctgagaccttgaggaggtggacactcccaggtctcaagccaataccaccaggc 30579350  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  30579349 caacccaagtgggtt 30579335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 240
Target Start/End: Original strand, 5273552 - 5273668
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||| ||||| ||| |||||||||||| ||| | |||||||| ||| |||||  | |||| |||||  |||||||||||||| |||||||  |    
T  5273552 aagaagctaaactagcccacccaaattggcaccggagacaatcaaacctaagaccttgaggaggagcacactctaaggtcccaagccaacaccaccaggc 5273651  T
Q  224 caacccaagtgggttct 240  Q
    |||||||||||||||||    
T  5273652 caacccaagtgggttct 5273668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 41487473 - 41487362
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccgaga-gattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| |||||||||||||||| || || || ||||||||| |||||    |||  |||||| | ||||||||||||||||||||  |    
T  41487473 aagaagctaaattagcccacctaaattggcaccgggaagaatcgaacctgagaccttgag---gagaacactcccaagtcccaagccaataccaccaggc 41487377  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  41487376 caacccaagtgggtt 41487362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 5579196 - 5579310
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccgag-agattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||| |||||| || ||| |||||||||||| | ||| |||||||||||| |||||  | |||| |||||| |||||||||||||| |||||||       
T  5579196 aagaagcgaaattatcccacccaaattggcaccggggagagtcaaacctgagaccttgaggaggagcacactccaaggtcccaagccaacaccaccaggt 5579295  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  5579296 caacccaagtgggtt 5579310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 26459394 - 26459486
Alignment:
Q  147 aaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    ||||||||||| |||||| || ||||||||| |||||  | |||| |||||| |||||||||||||||||||| |  ||||||||||||||||    
T  26459394 aaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 26459486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 38374563 - 38374675
Alignment:
Q  127 gaagctaaattagcctacctaaattggcaccgag-agattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatacca 225  Q
    ||||||||| ||||| |||||||||||||||| | ||| || ||||| ||| |||||  | |||| |||||  |||||||||||||| |||||||  |||    
T  38374563 gaagctaaactagcccacctaaattggcaccggggagaatcgaacctaagaccttgaggaggagcacactctaaggtcccaagccaacaccaccacgcca 38374662  T
Q  226 acccaagtgggtt 238  Q
    |||||||||||||    
T  38374663 acccaagtgggtt 38374675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 233
Target Start/End: Original strand, 41519227 - 41519335
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccgagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatacc 224  Q
    ||||||||||||||||| |||||||||| ||| ||||||  | ||||||||| |||||  | |||| ||||||||  ||||||| ||||||||| |  ||    
T  41519227 aagaagctaaattagcccacctaaattgacacagagagaagcgaacctgagaccttgaggaggagcacactcctaaatcccaagtcaataccactaggcc 41519326  T
Q  225 aacccaagt 233  Q
    |||||||||    
T  41519327 aacccaagt 41519335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 43215264 - 43215184
Alignment:
Q  158 gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||||| || ||||||||| |||||  | |||| |||||| |||||||||||||||||||| | |||||||||||||||||    
T  43215264 gagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccactagaccaacccaagtgggtt 43215184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 236
Target Start/End: Original strand, 44628146 - 44628257
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccgagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatacc 224  Q
    ||||||||||||||||| ||| |||||| ||||||| || |||||| |||||  ||||  | |||| |||||| ||||||||||| || | |||||  ||    
T  44628146 aagaagctaaattagcccaccaaaattgacaccgagggaatcaaacttgagactttgaggaggagcacactccaaggtcccaagctaacaacaccaggcc 44628245  T
Q  225 aacccaagtggg 236  Q
    ||||||||||||    
T  44628246 aacccaagtggg 44628257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 15137667 - 15137553
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||| ||||||||||| ||| |||||| |||| |||||| || ||||||||| |||||  | |||| ||||||||  ||||||| || ||||||||  |    
T  15137667 aagaaactaaattagcccacccaaattgacaccagagagaatctaacctgagaccttgaggaggagcacactcctaaatcccaagtcagtaccaccaggc 15137568  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  15137567 caacccaagtgggtt 15137553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 22760933 - 22760863
Alignment:
Q  168 aacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    ||||||||| |||||  | |||| |||||| |||||||||| ||||||||||| |||||||||||||||||    
T  22760933 aacctgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaacccaagtgggtt 22760863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 43591021 - 43590907
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| |||| |||||||||  | |||| || |||||||||  ||||  | |||| |||||| | ||||||||||||||||||||  |    
T  43591021 aagaagctaaattagcccaccttaattggcactagggagaatcgaacctgagacattgaggaggagcacactcccaagtcccaagccaataccaccaggc 43590922  T
Q  224 caacccaagtgggtt 238  Q
    |||||||| ||||||    
T  43590921 caacccaactgggtt 43590907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 48125199 - 48125251
Alignment:
Q  187 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggttc 239  Q
    |||| |||||| |||||||||||||| ||||||| ||||||||||||||||||    
T  48125199 gagcacactccaaggtcccaagccaacaccaccagaccaacccaagtgggttc 48125251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 238
Target Start/End: Complemental strand, 7801287 - 7801180
Alignment:
Q  132 taaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaaccca 230  Q
    |||||||||| || ||||||| || || || | ||| ||||||||| |||||| | |||| |||||| |||||||||| |||||||||||  |||| |||    
T  7801287 taaattagcccacttaaattgacatcggaggggttcgaacctgagaccttgaagaggagcacactcccaggtcccaagtcaataccaccaggccaaacca 7801188  T
Q  231 agtgggtt 238  Q
    ||||||||    
T  7801187 agtgggtt 7801180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 33460384 - 33460499
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccgag-agattcaaacctgagatcttgaataag-agcgcactcctaggtcccaagccaataccaccata 222  Q
    ||||||||||| ||||| || ||||||| ||||| | ||| || || |||||| ||||||  || | | |||||||||||||||| |||||||||||| |    
T  33460384 aagaagctaaactagcccacataaattgacaccggggagaatcgaatctgagaccttgaaggaggaccacactcctaggtcccaaaccaataccaccaaa 33460483  T
Q  223 ccaacccaagtgggtt 238  Q
    |||||||| |||||||    
T  33460484 ccaacccaggtgggtt 33460499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 43663057 - 43663168
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||| | ||| ||||||  |||| |||||||| |||||||||||| ||  | || | | ||||||||||||||| |||||||| ||  |    
T  43663057 aagaagctaaattagtccacccaaattgataccggagagattcgaacctgagatctcgaggaggaccacgctcctaggtcccaagtcaataccatcaggc 43663156  T
Q  224 caacccaagtgg 235  Q
    ||||||||||||    
T  43663157 caacccaagtgg 43663168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 17040974 - 17041088
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    |||||||||||||  || ||| ||||||||||  |||||| || ||||||||| |||||  | |||| |||| | || |||||||||||| |||| | ||    
T  17040974 aagaagctaaattgacccacccaaattggcacttgagagaatcgaacctgagaccttgaggaggagcacacttccagatcccaagccaatgccactagac 17041073  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  17041074 caacccaagtgggtt 17041088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 48772052 - 48771938
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| ||||||||||| ||  | || | || ||||||||| ||  |  | |||| |||||| || |||||||||||||||||||  |    
T  48772052 aagaagctaaattagcccacctaaattggtacttgggataatcgaacctgagacctcaaggaggagcacactcccagatcccaagccaataccaccaagc 48771953  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  48771952 caacccaagtgggtt 48771938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 42836024 - 42836077
Alignment:
Q  185 aagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||||| |||||| |||||||||||||||||||| |  ||||||||||||||||    
T  42836024 aagagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42836077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 21558242 - 21558146
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccacca 220  Q
    |||||||||||||| || ||||||||||||||| |||||| || ||||||||| |||||  | |||| || || ||||| ||||| |||||| ||||    
T  21558242 aagaagctaaattaacccacctaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacattcttaggttccaagtcaatactacca 21558146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 236
Target Start/End: Original strand, 29385705 - 29385817
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccga-gagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||| ||| ||||| ||| ||||||||||| | |||| |||||||||||| |||||  | |||| |||||| | |||||||||||| |||| |   |    
T  29385705 aagaagcaaaagtagcccacccaaattggcaccaaagagaatcaaacctgagaccttgaggaggagcacactccaaagtcccaagccaacaccatccggc 29385804  T
Q  224 caacccaagtggg 236  Q
    |||||||||||||    
T  29385805 caacccaagtggg 29385817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 39631924 - 39631844
Alignment:
Q  158 gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||||| || ||||||||| |||||  | ||||  ||||| |||||||||||||||||||| |  ||||||||||||||||    
T  39631924 gagagaatcgaacctgagaccttgaggaggagcttactcccaggtcccaagccaataccactaggccaacccaagtgggtt 39631844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 4566391 - 4566501
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||| ||||||||||| | ||||||||||||| |||||| |||||||||||| |||||  | ||   |||||| |||||| ||| ||||||||| |  |    
T  4566391 aagaaactaaattagcc-atctaaattggcaccagagagaatcaaacctgagaccttgagaaggaatacactccaaggtccgaagtcaataccactaggc 4566489  T
Q  224 caacccaagtgg 235  Q
    ||||||||||||    
T  4566490 caacccaagtgg 4566501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 19553567 - 19553453
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccgag-agattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||| ||||| ||||||||||| |||| | ||| |  ||||| ||| |||||  | |||| |||||| |||||| |||||||||||||||  |    
T  19553567 aagaagctaaagtagcccacctaaattggaaccggggagaattgaacctaagaccttgaggaggagcacactcccaggtcc-aagccaataccaccaggc 19553469  T
Q  224 caacccaagtgggttc 239  Q
    ||||||||| ||||||    
T  19553468 caacccaagcgggttc 19553453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 25021360 - 25021411
Alignment:
Q  187 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||| |||||| |||||||||||||||||||| |  ||||||||||||||||    
T  25021360 gagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 25021411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 3280523 - 3280561
Alignment:
Q  200 ggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  3280523 ggtcccaagccaataccaccatgtcaacccaagtgggtt 3280561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 4161358 - 4161288
Alignment:
Q  168 aacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    ||||| ||||||| || | |||| |||| | || ||||||||||||||||||| |||||||||| ||||||    
T  4161358 aacctaagatcttcaaaaggagcacacttcaagatcccaagccaataccaccagaccaacccaaatgggtt 4161288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 25132341 - 25132435
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccgagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccacc 219  Q
    ||||||||||||||||| ||| ||||| |||  | |||| || ||||||||| ||| |  | |||| ||||||||||||| ||| ||||||||||    
T  25132341 aagaagctaaattagcccacccaaattagcattgggagaatcgaacctgagaccttaagaaggagcacactcctaggtcctaagtcaataccacc 25132435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 28236606 - 28236652
Alignment:
Q  187 gagcgcactcctaggtcccaagccaataccaccataccaacccaagt 233  Q
    ||||||||||| ||||||||||||||||||| || | ||||||||||    
T  28236606 gagcgcactcccaggtcccaagccaataccatcaaatcaacccaagt 28236652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 31835306 - 31835192
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||| |||||  || ||||||||||| | || | || ||||||||| |||||  | |||| |||||| ||  |||||||||| |||||||  |    
T  31835306 aagaagctaaactagcccgccaaaattggcaccagggataatcgaacctgagaccttgaggaggagcacactccaagcacccaagccaacaccaccaggc 31835207  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  31835206 caacccaagtgggtt 31835192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 33181172 - 33181266
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccac 218  Q
    ||||||||||||||||| ||| |||||| |||  ||| || || ||||||||||||||| |  |||| |||||| | |||||||||| |||||||    
T  33181172 aagaagctaaattagcccacccaaattgacactagagggaatcgaacctgagatcttgagttggagcacactcccaagtcccaagcctataccac 33181266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 15905698 - 15905746
Alignment:
Q  187 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgg 235  Q
    |||| |||||| |||||||||||||||||| |||  |||||||||||||    
T  15905698 gagcacactcccaggtcccaagccaataccgccaggccaacccaagtgg 15905746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 238
Target Start/End: Original strand, 18056743 - 18056851
Alignment:
Q  131 ctaaattagcctacctaaattggcaccgag-agattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaaccc 229  Q
    ||||||||||| ||| ||||| |||||| | ||| || ||||||||| ||| |  | |||| |||||| | | |||||| ||||||||||| || |||||    
T  18056743 ctaaattagcccacccaaattagcaccggggagaatcgaacctgagaccttcaggaggagcacactccgaagacccaagtcaataccaccagactaaccc 18056842  T
Q  230 aagtgggtt 238  Q
    |||||||||    
T  18056843 aagtgggtt 18056851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 39499756 - 39499796
Alignment:
Q  199 aggtcccaagccaataccaccataccaacccaagtgggttc 239  Q
    |||||||||||||||||||| |  |||||||||||||||||    
T  39499756 aggtcccaagccaataccactaggccaacccaagtgggttc 39499796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 15285 - 15399
Alignment:
Q  125 aagaagctaaattagcctacctaaattggca-ccgagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| ||||||||||||| |||||||| || ||||||||| || ||  | |||| |||||| |||||||||||||||||||||| ||    
T  15285 aagaagctaaattagcccacctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagac 15384  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  15385 caacccaagtgggtt 15399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 33549218 - 33549104
Alignment:
Q  125 aagaagctaaattagcctacctaaattggca-ccgagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||  ||||||||||||| |||||||| || ||||||||| || ||  | |||| |||||| |||||||||||||||||||||| ||    
T  33549218 aagaagctaaattagctcacctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagac 33549119  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  33549118 caacccaagtgggtt 33549104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 31622953 - 31623067
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| ||| |||||| ||||| || ||||||||||||||| || ||  | |||| |||||| |||||||||||||||||||||  ||    
T  31622953 aagaagctaaattagcccacccaaattgacaccggagtgattcaaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccggac 31623052  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  31623053 caacccaagtgggtt 31623067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 238
Target Start/End: Complemental strand, 30127512 - 30127400
Alignment:
Q  127 gaagctaaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatacca 225  Q
    |||||||||||| ||||||||||||||||||| | ||| || ||||||||| || ||| | |||| |||||| ||  |||||||||||||||||| ||||    
T  30127512 gaagctaaattaacctacctaaattggcaccggaaagaatcgaacctgagacctcgaagaggagcacactcccagaccccaagccaataccaccagacca 30127413  T
Q  226 acccaagtgggtt 238  Q
    |||||||||||||    
T  30127412 acccaagtgggtt 30127400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 240
Target Start/End: Complemental strand, 14558075 - 14557960
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccgagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatacc 224  Q
    ||||||||||||||| | ||| |||||| ||||| |||| || ||||||||| |  ||  | |||| |||| | |||||||||||||| ||||||| |||    
T  14558075 aagaagctaaattagaccacccaaattgacaccgggagaatcgaacctgagacccggaggaggagcacacttccaggtcccaagccaacaccaccagacc 14557976  T
Q  225 aacccaagtgggttct 240  Q
    ||||||||||||||||    
T  14557975 aacccaagtgggttct 14557960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 10338180 - 10338246
Alignment:
Q  168 aacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtg 234  Q
    ||||||||| |||||  | |||| |||||||||||||||||||||||||||||| ||||||||||||    
T  10338180 aacctgagaccttgaggaggagcacactcctaggtcccaagccaataccaccatgccaacccaagtg 10338246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 13441102 - 13441053
Alignment:
Q  186 agagcgcactcctaggtcccaagccaataccaccataccaacccaagtgg 235  Q
    ||||| |||||| |||||||||||||||||||||  ||||||||||||||    
T  13441102 agagcacactcccaggtcccaagccaataccacccgaccaacccaagtgg 13441053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 6385976 - 6385881
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccacc 219  Q
    ||||||||||||||||| ||| ||||| ||||| |||||| || ||||||||| ||| |  | |||| || ||| |||||||||| ||||||||||    
T  6385976 aagaagctaaattagcccacccaaattagcaccggagagaatcgaacctgagaccttaaggaggagcacagtcccaggtcccaagtcaataccacc 6385881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 12188328 - 12188379
Alignment:
Q  187 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||| |||||| |||||||||||||||||||| |  ||||||||||||||||    
T  12188328 gagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 12188379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 21418584 - 21418469
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| |||| |||||||||  | |||| || ||| |||||  | ||  | |||| |||||| | ||||||||||||||||||||  |    
T  21418584 aagaagctaaattagcccaccttaattggcactagggagaatcgaacttgagacatggaggaggagcacactcccaagtcccaagccaataccaccaggc 21418485  T
Q  224 caacccaagtgggttc 239  Q
    |||||||| |||||||    
T  21418484 caacccaactgggttc 21418469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 12234469 - 12234583
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    |||||||||||||| || | |||||||| ||| | ||||| || ||||||||| || ||    |||| |||||| |||||||||| |||||||||||  |    
T  12234469 aagaagctaaattatcccatctaaattgacactggagagaatcgaacctgagacctcgagagggagcacactcccaggtcccaagtcaataccaccaggc 12234568  T
Q  224 caacccaagtgggtt 238  Q
    ||||| |||||||||    
T  12234569 caacctaagtgggtt 12234583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 22694 - 22747
Alignment:
Q  185 aagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||||| |||||| |||||||||||||| ||||| |  ||||||||||||||||    
T  22694 aagagcacactccaaggtcccaagccaaaaccactagcccaacccaagtgggtt 22747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 14278086 - 14278186
Alignment:
Q  138 agcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtggg 236  Q
    |||| ||| |||||| |||| |||||| |||||||||||| ||| |  | ||||||||||| |||||| ||||||||| |||||  |||||||| |||||    
T  14278086 agcccacccaaattgacaccagagagaatcaaacctgagaccttaaggaggagcgcactcccaggtccaaagccaata-caccaggccaacccatgtggg 14278184  T
Q  237 tt 238  Q
    ||    
T  14278185 tt 14278186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 42602668 - 42602554
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| ||| |||||||||||| ||||| |||||||| ||| |||||  | |||| |||||| |||||||||||||||||||| |  |    
T  42602668 aagaagctaaattagcccacccaaattggcaccggagagaatcaaacctaagaccttgagaaggagcacactcccaggtcccaagccaataccactaggc 42602569  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  42602568 caacccaagtgggtt 42602554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 125 - 239
Target Start/End: Original strand, 42327357 - 42327472
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccga-gagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    |||| |||||||||||| ||| ||||||||||||| |||| || ||||||||| |||||  | |||| |||||| |||||||||||||||||||| |  |    
T  42327357 aagatgctaaattagcccacccaaattggcaccgaagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggc 42327456  T
Q  224 caacccaagtgggttc 239  Q
    ||||||||||||||||    
T  42327457 caacccaagtgggttc 42327472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 19016145 - 19016031
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    |||||||||||||||||||| |||||||||||| | |||| |||||| ||||| || ||  | |||| |||||| | ||| ||||||||||||| || ||    
T  19016145 aagaagctaaattagcctacttaaattggcaccggggagaatcaaacttgagacctcgaggaggagcacactcccaagtctcaagccaataccatcagac 19016046  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  19016045 caacccaagtgggtt 19016031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 37480189 - 37480075
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccgag-agattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| ||| ||||||| |||| | ||| || ||||||||| |||||  | |||| |||||  ||||||||||||||||||||||  |    
T  37480189 aagaagctaaattagcccacccaaattgggaccggggagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccaccaggc 37480090  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  37480089 caacccaagtgggtt 37480075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 29503384 - 29503271
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccgagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatacc 224  Q
    ||||||||||||| ||| || ||||||| ||||| |||| || ||||||||| |||||  | |||| |||||| ||||||||| |||||||||| |  ||    
T  29503384 aagaagctaaatttgcccacttaaattgacaccgggagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaaaccaataccactaggcc 29503285  T
Q  225 aacccaagtgggtt 238  Q
    ||||||||||||||    
T  29503284 aacccaagtgggtt 29503271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 238
Target Start/End: Complemental strand, 39715103 - 39714992
Alignment:
Q  128 aagctaaattagcctacctaaattggcaccgag-agattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaa 226  Q
    |||||||||||||| |||||||||||  | | | ||| || ||||||||| || ||  | |||| |||||| |||||||||| |||||||||||| ||||    
T  39715103 aagctaaattagcccacctaaattggtgctggggagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccatgccaa 39715004  T
Q  227 cccaagtgggtt 238  Q
    ||||||||||||    
T  39715003 cccaagtgggtt 39714992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 7798998 - 7799111
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| || ||||||||||| | ||||| || || ||||||||| ||  | |||| |||||| | ||||||||||||||||||||       
T  7798998 aagaagctaaattagcc-acttaaattggcactggagagaatcgaatctgagatctcgaggaggagcacactcccaagtcccaagccaataccaccagga 7799096  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  7799097 caacccaagtgggtt 7799111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 220
Target Start/End: Original strand, 12086090 - 12086187
Alignment:
Q  124 aaagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccacca 220  Q
    |||||||||||||||||| ||||||||| ||||| ||| || || |||| |||| |||||  | |||| |||| | ||||||||||||||||||||||    
T  12086090 aaagaagctaaattagcccacctaaattagcaccggagggaatcgaacccgagaccttgaggaggagcacacttccaggtcccaagccaataccacca 12086187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 237
Target Start/End: Original strand, 37755933 - 37756046
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| ||  ||||||||| | ||| || || ||| ||||| || || || |||| || ||| ||||||||||||||||||||||  |    
T  37755933 aagaagctaaattagcccactcaaattggcatcagagggagtcgaacttgagacctcgagtaggagcacattcccaggtcccaagccaataccaccaagc 37756032  T
Q  224 caacccaagtgggt 237  Q
    ||||||||||||||    
T  37756033 caacccaagtgggt 37756046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 19322848 - 19322768
Alignment:
Q  158 gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||||| ||||||| |||| |||||| | |||| |||||| ||||||||| |||||||||| | | |||||||||||||||    
T  19322848 gagagaatcaaaccagagaccttgaagaggagcacactcccaggtcccaaaccaataccactagatcaacccaagtgggtt 19322768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 238
Target Start/End: Complemental strand, 11251194 - 11251087
Alignment:
Q  132 taaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaaccca 230  Q
    |||||||||  |||||||||| |||| |||||| |||||||||||| |||||  | |||| |||| | | |||||||||||||||||| |  |||||| |    
T  11251194 taaattagcacacctaaattgacaccagagagaatcaaacctgagaccttgaggaggagcacacttccaagtcccaagccaataccactaagccaaccta 11251095  T
Q  231 agtgggtt 238  Q
    ||||||||    
T  11251094 agtgggtt 11251087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 26482206 - 26482092
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccgag-agattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||| ||||||||| ||  |||||||||| ||| ||| || ||||||||| |||||  | |||| ||||||||||||||||||||| |||| ||  |    
T  26482206 aagaagccaaattagcccactgaaattggcactgaggagaatcgaacctgagaccttgag-aggagcacactcctaggtcccaagccaacaccatcaggc 26482108  T
Q  224 caacccaagtgggttc 239  Q
    ||||| ||||||||||    
T  26482107 caacctaagtgggttc 26482092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 1435177 - 1435064
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| ||| |||||| |||| |||||| || ||| ||||| |||||  |  ||| ||||||||  |||||||||| |||||| || |    
T  1435177 aagaagctaaattagcccacccaaattgacaccagagagaatcgaac-tgagaccttgaggagaagcacactcctaaatcccaagccagtaccactatgc 1435079  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  1435078 caacccaagtgggtt 1435064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 18825454 - 18825341
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccgag-agattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    |||||||| || ||||||||| |||||||||||| | | | |||||| ||||| |||||  | |||| ||||||||||||||||||||| |||||||       
T  18825454 aagaagctcaactagcctaccgaaattggcaccggggaaaatcaaacttgagaccttgag-aggagcacactcctaggtcccaagccaacaccaccaggt 18825356  T
Q  224 caacccaagtgggtt 238  Q
     ||||||||||||||    
T  18825355 aaacccaagtgggtt 18825341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 230
Target Start/End: Complemental strand, 21213883 - 21213777
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccgag-agattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||| ||| ||||| |||||||||||||||| | ||| || ||||||||| ||  |  | || | |||||| |||||||||||||||||||||| ||    
T  21213883 aagaagcaaaactagcccacctaaattggcaccggggagaatcgaacctgagacctcaaggaggaacacactcccaggtcccaagccaataccaccagac 21213784  T
Q  224 caaccca 230  Q
    |||||||    
T  21213783 caaccca 21213777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 238
Target Start/End: Complemental strand, 19244222 - 19244109
Alignment:
Q  126 agaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatacc 224  Q
    |||| ||||||||||| ||  ||||||||||| |||||| || ||||||||| ||||   | |||| |||||  |||||||||| ||||||||  | |||    
T  19244222 agaaactaaattagcccactcaaattggcaccagagagaatcgaacctgagaccttggggaggagcacactctcaggtcccaagtcaataccagtagacc 19244123  T
Q  225 aacccaagtgggtt 238  Q
    ||||||||||||||    
T  19244122 aacccaagtgggtt 19244109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 240
Target Start/End: Complemental strand, 26545955 - 26545838
Alignment:
Q  124 aaagaagctaaattagcctacctaaattggcaccga-gagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccata 222  Q
    |||| |||||||||| || ||||||||||  | ||| |||| |||||| ||||| || ||  | |||| |||| | || |||||||| |||||||||| |    
T  26545955 aaagcagctaaattaacccacctaaattgatatcgaagagaatcaaacttgagacctcgagaaggagcacacttccagatcccaagctaataccaccaaa 26545856  T
Q  223 ccaacccaagtgggttct 240  Q
    ||||||||||||||||||    
T  26545855 ccaacccaagtgggttct 26545838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 3697431 - 3697475
Alignment:
Q  194 ctcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||| ||||||||||||||||||| || |||||||||||||||||    
T  3697431 ctccaaggtcccaagccaataccatcagaccaacccaagtgggtt 3697475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 37972008 - 37971957
Alignment:
Q  126 agaagctaaattagcctacctaaattggcacc-gagagattcaaacctgaga 176  Q
    |||||||||||||||| ||||||||||||||| |||||| || |||||||||    
T  37972008 agaagctaaattagcccacctaaattggcaccggagagaatcgaacctgaga 37971957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 23052485 - 23052599
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||| ||||||||||| ||| ||| ||||||  | |||| || ||||||||| |||||  |  ||| |||||| | ||||||||||||||||||||  |    
T  23052485 aagaaactaaattagcccacccaaactggcactagggagaatcgaacctgagaccttgaggagaagcacactcccaagtcccaagccaataccaccaggc 23052584  T
Q  224 caacccaagtgggtt 238  Q
    ||||| |||||||||    
T  23052585 caacctaagtgggtt 23052599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 42922507 - 42922413
Alignment:
Q  147 aaattggcacc-gagagattcaaacctgagatctt-gaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggttc 239  Q
    ||||||||||| |||||| || ||||||||| ||| ||  | |||| |||||| |||| ||||||||||||||| |  |||||||||||||||||    
T  42922507 aaattggcaccagagagaatcgaacctgagacctttgaggaggagcacactcccaggttccaagccaataccactaggccaacccaagtgggttc 42922413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 4262273 - 4262354
Alignment:
Q  133 aaattagcctacctaaattggcaccgagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaata 214  Q
    |||||| ||||||||||||| | | |||||| || ||||||||| |||||  | |||| |||| | ||||||||||||||||    
T  4262273 aaattaacctacctaaattgacccggagagaatcgaacctgagaccttgaggaggagcacactgccaggtcccaagccaata 4262354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 1729908 - 1729816
Alignment:
Q  147 aaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    ||||||||||| |||||| ||||| || ||| || ||  | |||| |||||| | |||||||||||||||||| |  ||||||||||||||||    
T  1729908 aaattggcaccagagagaatcaaatctaagacctagaggaggagcacactcccaagtcccaagccaataccactagcccaacccaagtgggtt 1729816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 153
Target Start/End: Original strand, 12982458 - 12982486
Alignment:
Q  125 aagaagctaaattagcctacctaaattgg 153  Q
    |||||||||||||||||||||||||||||    
T  12982458 aagaagctaaattagcctacctaaattgg 12982486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 30359705 - 30359657
Alignment:
Q  187 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgg 235  Q
    |||| |||||| |||||||||||||| |||||||  |||||||||||||    
T  30359705 gagcacactccaaggtcccaagccaacaccaccaagccaacccaagtgg 30359657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 236
Target Start/End: Complemental strand, 3624690 - 3624582
Alignment:
Q  128 aagctaaattagcctacctaaattggcaccgagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaac 227  Q
    |||||||||||||| |||||||||| | | |||||| || ||||||||| |||||| | |||| |||||| |||||||||||||||||||| |  |||||    
T  3624690 aagctaaattagcccacctaaattgacccggagagaatcgaacctgagaccttgaagaggagcacactcccaggtcccaagccaataccactaggccaac 3624591  T
Q  228 ccaagtggg 236  Q
    |||||||||    
T  3624590 ccaagtggg 3624582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 968476 - 968361
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| ||||||||||||| || ||||| || ||||||||| || ||  | |||| |||||| ||||||||||||||||||||||  |    
T  968476 aagaagctaaattagcccacctaaattggcatcggagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccaggc 968377  T
Q  224 caacccaagtgggttc 239  Q
    |||| |||||||||||    
T  968376 caactcaagtgggttc 968361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 28783174 - 28783060
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccgag-agattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| ||| |||||||||||||| ||| || ||| ||||| |||||  | |||| |||||| ||||| ||||||||||||||||  |    
T  28783174 aagaagctaaattagcccacccaaattggcaccgaggagaatcgaacatgagaccttgaggaggagcacactcccaggtctcaagccaataccaccaagc 28783075  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  28783074 caacccaagtgggtt 28783060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 6536634 - 6536540
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccac 218  Q
    |||||||||||||| || ||||||||||||||| |||||| |  ||||||||| |||||  | |||| |||||||||||||||||||||||||||    
T  6536634 aagaagctaaattaacccacctaaattggcaccagagagaattgaacctgagaccttgaggaggagcacactcctaggtcccaagccaataccac 6536540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 8485113 - 8484999
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| ||||||||||||||| |||||| || ||  ||||| ||  || | |||| |||||  ||||||||||| ||||||||||  |    
T  8485113 aagaagctaaattagcccacctaaattggcaccggagagaatcgaaaatgagacctcaaagaggagcacactcacaggtcccaagcaaataccaccaggc 8485014  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  8485013 caacccaagtgggtt 8484999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 11793483 - 11793597
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccgaga-gattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||| ||||| ||| |||||||||||| || || |||||||| ||| |||||  | |||| |||||| ||||||||||| || ||||| | ||    
T  11793483 aagaagctaaactagcccacccaaattggcaccgggaagaatcaaacctaagaccttgaggaggagcacactccaaggtcccaagcgaacaccacaagac 11793582  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  11793583 caacccaagtgggtt 11793597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 16852454 - 16852340
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccgag-agattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||| ||||| ||||||||||||||  || ||| || ||||||||| || ||  | |||| |||||| |||||||||||||||||||| |  |    
T  16852454 aagaagctaaaatagcccacctaaattggcactaaggagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccactaggc 16852355  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  16852354 caacccaagtgggtt 16852340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 29858014 - 29858124
Alignment:
Q  128 aagctaaattagcctacctaaattggcaccga-gagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaa 226  Q
    |||||||||||||| ||||||||||||||||| | || || ||||||||| || ||  | |||| ||||||  |||||||||||||||||||||  ||||    
T  29858014 aagctaaattagcccacctaaattggcaccgaggggaatcgaacctgagacctcgaggaggagcacactccctggtcccaagccaataccaccaggccaa 29858113  T
Q  227 cccaagtgggt 237  Q
     ||||||||||    
T  29858114 tccaagtgggt 29858124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 238
Target Start/End: Original strand, 22268899 - 22269009
Alignment:
Q  128 aagctaaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaa 226  Q
    |||||||| || || |||||||| ||||||| ||| | |||||| ||||| |||||  |||||| |||||| |||||||||||||| |||||||  ||||    
T  22268899 aagctaaactaacccacctaaatgggcaccggagaaaatcaaacttgagaccttgag-aagagcacactccaaggtcccaagccaacaccaccaggccaa 22268997  T
Q  227 cccaagtgggtt 238  Q
    ||||||||||||    
T  22268998 cccaagtgggtt 22269009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 44780076 - 44780190
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| ||| |||||| |||  ||| || |||||||||||| |||||  | |||| |||||| | ||||||||||||| |||| |  |    
T  44780076 aagaagctaaattagcccacccaaattgacactagagggaatcaaacctgagaccttgaggaggagcacactcccaagtcccaagccaatgccactaggc 44780175  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  44780176 caacccaagtgggtt 44780190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 236
Target Start/End: Complemental strand, 2203603 - 2203494
Alignment:
Q  128 aagctaaattagcctacctaaattggcaccgag-agattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaa 226  Q
    |||||||||||||| ||| |||||||||||| | ||| |  | ||||||| |||||  | |||| |||||| |||||||||||||||||||| |  ||||    
T  2203603 aagctaaattagcccacccaaattggcaccggggagaattgaccctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaa 2203504  T
Q  227 cccaagtggg 236  Q
    ||||||||||    
T  2203503 cccaagtggg 2203494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 6530858 - 6530807
Alignment:
Q  187 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||| ||||||||||||||||||||| |||||||  ||||||||||||||||    
T  6530858 gagcacactcctaggtcccaagccaacaccaccaggccaacccaagtgggtt 6530807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 18540412 - 18540297
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    |||||||||||||| ||  |  ||||||||||| |||||| || ||||||||| |||||  |  ||  |||||| |||||||||||||||||||| |  |    
T  18540412 aagaagctaaattaaccctctcaaattggcaccagagagaatcgaacctgagaccttgaggagaagtacactcccaggtcccaagccaataccactaggc 18540313  T
Q  224 caacccaagtgggttc 239  Q
    ||||||||||||||||    
T  18540312 caacccaagtgggttc 18540297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 3058012 - 3058125
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccga-gagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    |||||||||||| |||| |||||||||| | |||| |||| || ||||||||| |||| | | |||| |||||| | | ||||| |||||||||||| ||    
T  3058012 aagaagctaaat-agcccacctaaattgacgccgaagagaatcgaacctgagaccttgcagaggagcacactcccaagacccaaaccaataccaccagac 3058110  T
Q  224 caacccaagtgggtt 238  Q
    |||||||| ||||||    
T  3058111 caacccaaatgggtt 3058125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 26688935 - 26688865
Alignment:
Q  168 aacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    ||||||||| |||||  | |||| |||||| |||||||||||||| |||||||  ||||||||||||||||    
T  26688935 aacctgagaccttgaggaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 26688865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 6436580 - 6436632
Alignment:
Q  187 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggttc 239  Q
    |||| |||||||| ||||||||||||||||||||   ||||||||||||||||    
T  6436580 gagcacactcctaagtcccaagccaataccaccagggcaacccaagtgggttc 6436632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 238
Target Start/End: Original strand, 23361617 - 23361725
Alignment:
Q  131 ctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaaccc 229  Q
    ||||||||||| |||||||||| |||| |||||| |  ||||||||| |||||  | |||| |||||| |  ||||||| |||||||||||   ||||||    
T  23361617 ctaaattagcccacctaaattgacaccagagagaattgaacctgagaccttgaggaggagcacactcccatatcccaagtcaataccaccaggtcaaccc 23361716  T
Q  230 aagtgggtt 238  Q
    |||||||||    
T  23361717 aagtgggtt 23361725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 43969023 - 43969075
Alignment:
Q  187 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggttc 239  Q
    |||| |||||||| | ||||||||||||||| ||| |||||||||||||||||    
T  43969023 gagcacactcctaagccccaagccaataccatcatgccaacccaagtgggttc 43969075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 19703456 - 19703563
Alignment:
Q  132 taaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaaccca 230  Q
    |||||||||| |||| ||||| |||  | |||| || ||||||||| |||||  | |||| |||||  |||||||||||||||||||| |  ||||||||    
T  19703456 taaattagcccaccttaattgacactagggagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccactaggccaaccca 19703555  T
Q  231 agtgggtt 238  Q
    ||||||||    
T  19703556 agtgggtt 19703563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 40136938 - 40137012
Alignment:
Q  137 tagcctacctaaattggcaccgagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaa 212  Q
    ||||| ||| |||||||||||| |||| |||||||||||| |||| | | |||| |||||| ||||||||||||||    
T  40136938 tagcccaccgaaattggcaccgggagaatcaaacctgagaccttg-agaggagcacactccaaggtcccaagccaa 40137012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 25389526 - 25389476
Alignment:
Q  168 aacctgagatcttgaataagagcgcactcctaggtcccaagccaataccac 218  Q
    ||||| |||||||||| | ||||  ||||||||||||||||||||||||||    
T  25389526 aacctaagatcttgaagaggagcatactcctaggtcccaagccaataccac 25389476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 34986147 - 34986102
Alignment:
Q  193 actcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    ||||| ||||||||| |||||||||||| | |||||||||||||||    
T  34986147 actcccaggtcccaaaccaataccaccagaacaacccaagtgggtt 34986102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 31088787 - 31088735
Alignment:
Q  125 aagaagctaaattagcctacctaaattggca-ccgagagattcaaacctgaga 176  Q
    |||||| |||||||||||||||||||||| | | |||||| ||||||||||||    
T  31088787 aagaagttaaattagcctacctaaattggtatcagagagaatcaaacctgaga 31088735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 33692334 - 33692374
Alignment:
Q  194 ctcctaggtcccaagccaataccaccataccaacccaagtg 234  Q
    |||||| ||| |||||||||||||||| |||||||||||||    
T  33692334 ctcctatgtctcaagccaataccaccaaaccaacccaagtg 33692374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 16773921 - 16773806
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| ||||||||||||| | |||||| || ||||||||| || ||  | |||| |||||| |||||||||| ||||||||||| ||    
T  16773921 aagaagctaaattagcccacctaaattggcatcagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagac 16773822  T
Q  224 caacccaagtgggttc 239  Q
    |||| |||||||||||    
T  16773821 caactcaagtgggttc 16773806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 8278237 - 8278351
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| |||||||| ||||||| ||| | |||||| |||||||| ||  | |||| |||||| | ||||||||||||||||| || ||    
T  8278237 aagaagctaaattagcccacctaaatcggcaccggagataatcaaacttgagatctcgaggaggagcacactcccaagtcccaagccaataccatcagac 8278336  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  8278337 caacccaagtgggtt 8278351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 30109271 - 30109384
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccgagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatacc 224  Q
    ||||||||||||||||| ||||||||| |||||| | || || ||||||||| ||  |  | |||| |||||| ||||| ||||||||||||||||  ||    
T  30109271 aagaagctaaattagcccacctaaattagcaccgggggaatcgaacctgagacctcaaggaggagcacactcccaggtcacaagccaataccaccaagcc 30109370  T
Q  225 aacccaagtgggtt 238  Q
    ||||||||||||||    
T  30109371 aacccaagtgggtt 30109384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 29075895 - 29075781
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| | ||||||||||||| |||||| || ||| |||||||| ||  | |||| |||||| || ||||||||||||||||| |  |    
T  29075895 aagaagctaaattagcccatctaaattggcaccagagagaatcgaacatgagatctcgaggaggagcacactcccagatcccaagccaataccactaggc 29075796  T
Q  224 caacccaagtgggtt 238  Q
     ||||||||||||||    
T  29075795 aaacccaagtgggtt 29075781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 21589402 - 21589287
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||| ||||| ||||||||||||||| ||| || || |||||||||  | ||  |  |||  ||||| ||||||||||||||||||||||  |    
T  21589402 aagaagctaaactagcccacctaaattggcaccagagggaatcgaacctgagacatcgaggagtagcagactcccaggtcccaagccaataccaccaggc 21589303  T
Q  224 caacccaagtgggttc 239  Q
    ||||||||||||||||    
T  21589302 caacccaagtgggttc 21589287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 14495767 - 14495881
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||| ||||| | ||||||||||| || ||||| ||||| |||||| || ||  | |||| |||||| || ||||||| ||||||||||| ||    
T  14495767 aagaagctaaactagcccatctaaattggcatcggagagaatcaaatctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagac 14495866  T
Q  224 caacccaagtgggtt 238  Q
    |||||||| ||||||    
T  14495867 caacccaaatgggtt 14495881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 34984898 - 34984806
Alignment:
Q  147 aaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    ||||||||||| |||||| || ||||| ||| |||||  | |||| |||||| |||| ||||||||||||||| | |||||||||||||||||    
T  34984898 aaattggcaccagagagaatcgaacctaagaccttgaggaggagcacactcccaggttccaagccaataccactagaccaacccaagtgggtt 34984806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 30883223 - 30883274
Alignment:
Q  187 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||| |||||| |||||||||||||||||||| | |||||||||||||||||    
T  30883223 gagcacactcccaggtcccaagccaataccactagaccaacccaagtgggtt 30883274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 17028226 - 17028340
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcac-cgagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| |||||||||| |||  ||| || |||||||||||| |||||  | |||| |||||| | ||||||| ||||||| || |       
T  17028226 aagaagctaaattagcccacctaaattgacactagagggaatcaaacctgagaccttgaggaggagcacactcccaagtcccaacccaatacaactaggt 17028325  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  17028326 caacccaagtgggtt 17028340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 29692348 - 29692462
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||| ||||||||| | ||| ||||||||| || ||||| | ||||||||||  ||||  | |||| |||||| || |||||| |||||||||||| ||    
T  29692348 aagaaactaaattagtccacccaaattggcatcggagagaattaaacctgagactttgaggaggagcacactcccagatcccaatccaataccaccagac 29692447  T
Q  224 caacccaagtgggtt 238  Q
    |||||||| ||||||    
T  29692448 caacccaaatgggtt 29692462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 7918453 - 7918545
Alignment:
Q  147 aaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    ||||||||||| |||||| || ||||| ||| |||||  | ||| ||||||| |||| ||||||||||||||| |  ||||||||||||||||    
T  7918453 aaattggcaccagagagaatcgaacctaagaccttgaggaggagtgcactcccaggttccaagccaataccactaggccaacccaagtgggtt 7918545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 16457861 - 16457809
Alignment:
Q  187 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggttc 239  Q
    |||| |||||| ||||||||||||||||||||||  |||||| ||||||||||    
T  16457861 gagcacactccaaggtcccaagccaataccaccaggccaacctaagtgggttc 16457809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 15057488 - 15057527
Alignment:
Q  199 aggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  15057488 aggttccaagccaacaccaccataccaacccaagtgggtt 15057527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 21549162 - 21549213
Alignment:
Q  187 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||| |||||| |||||||||||||||||||| |  ||||||||||||||||    
T  21549162 gagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 21549213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 18989015 - 18989077
Alignment:
Q  176 atcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||||||| | |||| |||||| |||||||||||||| |||| ||| | ||||||||||||||    
T  18989015 atcttgaagaggagcacactccaaggtcccaagccaacaccatcatgcaaacccaagtgggtt 18989077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 22737119 - 22737082
Alignment:
Q  201 gtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||||||||||||||||| | |||||||||||||||||    
T  22737119 gtcccaagccaataccactagaccaacccaagtgggtt 22737082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 31669055 - 31669100
Alignment:
Q  193 actcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    ||||| |||||||||||||| |||| || |||||||||||||||||    
T  31669055 actccaaggtcccaagccaacaccatcagaccaacccaagtgggtt 31669100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 4793041 - 4793073
Alignment:
Q  124 aaagaagctaaattagcctacctaaattggcac 156  Q
    |||||||||||||||||| ||||||||||||||    
T  4793041 aaagaagctaaattagcccacctaaattggcac 4793073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 238
Target Start/End: Complemental strand, 14285253 - 14285161
Alignment:
Q  147 aaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    ||||||||||| |||||| || ||||||||| |||||  | |||| |||||| |||| |||||||||| ||||    ||||||||||||||||    
T  14285253 aaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggttccaagccaattccactcggccaacccaagtgggtt 14285161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 25627137 - 25627057
Alignment:
Q  158 gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||||| || ||||||||| |||||  | |||| |||||| | || ||||||||||||||| |  ||||||||||||||||    
T  25627137 gagagaatcgaacctgagaccttgaggaggagcacactcccaagttccaagccaataccactaggccaacccaagtgggtt 25627057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 7949416 - 7949530
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| |||||||||| |||| |||||| || ||||||||| |||||  | |||| |||||| |||||||||||||||||| | |  |    
T  7949416 aagaagctaaattagcccacctaaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccgctaggc 7949515  T
Q  224 caacccaagtgggtt 238  Q
    || ||||||||||||    
T  7949516 cagcccaagtgggtt 7949530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 51250484 - 51250598
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| ||| |||||||||||| || || || ||| |||||||||||    |||| |||||| || |||||||||||||||||||  |    
T  51250484 aagaagctaaattagcccacccaaattggcaccggagggaatcgaacttgagatcttgaggcggagcacactcccagatcccaagccaataccaccaggc 51250583  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  51250584 caacccaagtgggtt 51250598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 128 - 238
Target Start/End: Original strand, 55427165 - 55427276
Alignment:
Q  128 aagctaaattagcctacctaaattggcaccgag-agattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaa 226  Q
    |||||||||||||| ||| |||||||||||| | ||| || ||||||||| || ||  | ||||  ||||| ||||||||||||||||||||||  ||||    
T  55427165 aagctaaattagcccacccaaattggcaccgcggagaatcgaacctgagacctcgagcaggagcagactcccaggtcccaagccaataccaccaggccaa 55427264  T
Q  227 cccaagtgggtt 238  Q
    ||||||||||||    
T  55427265 cccaagtgggtt 55427276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 37109335 - 37109427
Alignment:
Q  147 aaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    ||||||||||| |||||| || ||||||||| |||||  | |||| |||||| |||||||||||||||||||| |  ||||||||||||||||    
T  37109335 aaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 37109427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 236
Target Start/End: Original strand, 40283948 - 40284060
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccgag-agattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    |||||| |||||||||| ||||||||||||||| || ||| |||||||| ||| |||||  |   || |||||| | ||||||||||||||||| ||| |    
T  40283948 aagaagttaaattagcccacctaaattggcaccaagcagaatcaaaccttagaccttgaggagatgcacactcccaagtcccaagccaataccatcatgc 40284047  T
Q  224 caacccaagtggg 236  Q
    |||||||||||||    
T  40284048 caacccaagtggg 40284060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 46295211 - 46295097
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccgag-agattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||| ||||| ||| |||||||||||| | ||| || ||||||||| |||||  | |||| |||||| | |||||||||||| || |||| ||    
T  46295211 aagaagctaaactagcccacccaaattggcaccggggagaatcgaacctgagaccttgaggaggagcacactccaatgtcccaagccaacactaccagac 46295112  T
Q  224 caacccaagtgggtt 238  Q
    ||||| |||||||||    
T  46295111 caacctaagtgggtt 46295097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 238
Target Start/End: Original strand, 19238542 - 19238653
Alignment:
Q  128 aagctaaattagcctacctaaattggcaccgag-agattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaa 226  Q
    |||||||||||||| ||| ||||||| |||| | ||| || |||| |||| || ||  | |||| |||||| | ||||||||||||||||||||  ||||    
T  19238542 aagctaaattagcccacccaaattggtaccggggagaatcgaacccgagacctcgaggaggagcacactcccaagtcccaagccaataccaccaggccaa 19238641  T
Q  227 cccaagtgggtt 238  Q
    ||||||||||||    
T  19238642 cccaagtgggtt 19238653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 37274421 - 37274536
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaa-taccaccata 222  Q
    ||||||||||||||||| || |||||| ||||| |||||| || ||||| ||| |||||  | |||| |||||| |||||||||||||| ||| || |      
T  37274421 aagaagctaaattagcccacttaaattagcaccagagagaatcgaacctaagaccttgaggaggagcacactcccaggtcccaagccaattacgactagg 37274520  T
Q  223 ccaacccaagtgggtt 238  Q
    ||||||||||||||||    
T  37274521 ccaacccaagtgggtt 37274536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 19680750 - 19680864
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||| || ||| | |||||||||||| |||||| || ||||| ||| |||||  |||||| |||||| | ||||||||| |||||||| |  |    
T  19680750 aagaagctaaactaacctccttaaattggcaccagagagaatcgaacctaagaccttgaggaagagcacactcccaagtcccaagcgaataccactaggc 19680849  T
Q  224 caacccaagtgggtt 238  Q
    ||| |||||||||||    
T  19680850 caatccaagtgggtt 19680864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 21660106 - 21660220
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||| |||||||||||| |||  |||| | || ||| ||||| || ||  |||||| |||||| || || |||| ||||||||||| ||    
T  21660106 aagaagctaaattagtctacctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagac 21660205  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||| ||||    
T  21660206 caacccaagttggtt 21660220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 21668870 - 21668984
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||| |||||||||||| |||  |||| | || ||| ||||| || ||  |||||| |||||| || || |||| ||||||||||| ||    
T  21668870 aagaagctaaattagtctacctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagac 21668969  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||| ||||    
T  21668970 caacccaagttggtt 21668984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 37720176 - 37720290
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| ||||||||||   || | |||| || |||||| || |||||  | | || |||||| |||||||||||||||| |||||  |    
T  37720176 aagaagctaaattagcccacctaaattgatccctgggagaatcgaacctgggaccttgaggaggggcacactcccaggtcccaagccaataacaccaggc 37720275  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  37720276 caacccaagtgggtt 37720290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 4911257 - 4911304
Alignment:
Q  187 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtg 234  Q
    |||| |||||||| ||||||||| |||||||||| |||||||||||||    
T  4911257 gagcacactcctaagtcccaagctaataccaccagaccaacccaagtg 4911304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 5795370 - 5795485
Alignment:
Q  125 aagaagctaaattagcct-acctaaattggcaccgag-agattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccata 222  Q
    ||||||||||| |||||  ||| |||||||||| | | ||| |||||||||||| |||||  | ||||  ||||| |||| ||||| ||| ||||||| |    
T  5795370 aagaagctaaactagccccacccaaattggcactggggagaatcaaacctgagaccttgaggaggagcatactccaaggtgccaagtcaacaccaccaga 5795469  T
Q  223 ccaacccaagtgggtt 238  Q
    ||||||||||||||||    
T  5795470 ccaacccaagtgggtt 5795485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 24234755 - 24234664
Alignment:
Q  128 aagctaaattagcctacctaaattggcaccgagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccacc 219  Q
    ||||||||||||||||||||| ||| | | |||||| || ||| ||||| ||| |  | |||| |||||| | |||||||||||||||||||    
T  24234755 aagctaaattagcctacctaatttgactctgagagaatcgaacttgagaccttcaggatgagcacactcccaagtcccaagccaataccacc 24234664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 24827876 - 24827825
Alignment:
Q  187 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    ||||||||||| |||||||||| ||||||||||  ||||||| |||||||||    
T  24827876 gagcgcactcccaggtcccaagtcaataccaccggaccaaccaaagtgggtt 24827825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 29195146 - 29195095
Alignment:
Q  187 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||| |||||| |||||||||||||| |||||||  ||||||||||||||||    
T  29195146 gagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 29195095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 6606127 - 6606058
Alignment:
Q  168 aacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||||||||||||||| | || | | |||| |||||||||||||| |||| || |||||||||||||||||    
T  6606127 aacctgagatcttgaa-aggatcactctccaaggtcccaagccaacaccatcagaccaacccaagtgggtt 6606058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Complemental strand, 17816623 - 17816593
Alignment:
Q  125 aagaagctaaattagcctacctaaattggca 155  Q
    |||||||||||||||||||||||||||||||    
T  17816623 aagaagctaaattagcctacctaaattggca 17816593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 28635810 - 28635696
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| ||| ||||||||||| |||||| || ||||| ||| ||  |  | |||| |||||| || ||||||| || ||||||||       
T  28635810 aagaagctaaattagcccacccaaattggcaccagagagaatcgaacctaagacctccaggaggagcacactcccagatcccaagtcagtaccaccagga 28635711  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  28635710 caacccaagtgggtt 28635696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 7292794 - 7292871
Alignment:
Q  158 gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgg 235  Q
    |||||| || |||||||||  ||||  | |||| |||||| |||| ||||||||||||||| | ||||||||||||||    
T  7292794 gagagaatcgaacctgagactttgaggaggagcacactcccaggttccaagccaataccactagaccaacccaagtgg 7292871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 13496278 - 13496241
Alignment:
Q  201 gtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  13496278 gtcccaagtcaataccaccatgccaacccaagtgggtt 13496241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 217
Target Start/End: Complemental strand, 19113014 - 19112929
Alignment:
Q  132 taaattagcctacctaaattggcaccgagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaatacca 217  Q
    |||||||| | ||||||||||| |||| |||| || ||||||| | || ||| | |||| |||||||||||| |||| ||||||||    
T  19113014 taaattagtccacctaaattggtaccgggagaatcgaacctgataactcgaagaggagcacactcctaggtctcaagtcaatacca 19112929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 19531964 - 19532057
Alignment:
Q  125 aagaagctaaattagcctacctaaattggca-ccgagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaatacca 217  Q
    |||| |||||||||||| ||||||||||||| | |||||| || ||||||| | ||| |  | |||| | |||||| |||||||||||||||||    
T  19531964 aagatgctaaattagcccacctaaattggcatcagagagaatcgaacctgaaaacttaaggaggagcacgctcctatgtcccaagccaatacca 19532057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 230
Target Start/End: Complemental strand, 34075621 - 34075516
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccgagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatacc 224  Q
    ||||||||||||||| | | ||||||||| || |||||| || ||||||||| |||||  | |||  || || ||| || ||| |||||||||||| |||    
T  34075621 aagaagctaaattagtccatctaaattggtacagagagaatctaacctgagaccttgagaaggagtacattcatagatctcaaaccaataccaccagacc 34075522  T
Q  225 aaccca 230  Q
    ||||||    
T  34075521 aaccca 34075516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 9241065 - 9241101
Alignment:
Q  202 tcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||||||||||||||||||  ||||||||||||||||    
T  9241065 tcccaagccaataccaccaggccaacccaagtgggtt 9241101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 12793873 - 12793905
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc 157  Q
    ||||||||||||||||| |||||||||||||||    
T  12793873 aagaagctaaattagcccacctaaattggcacc 12793905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 18037575 - 18037689
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| |||||||| ||||||| ||||| || ||| |||||||| ||| | |||| |||||| | ||||||| |||||| || || ||    
T  18037575 aagaagctaaattagcccacctaaatcggcaccggagagaatcgaacttgagatctcgaaaaggagcacactcccaagtcccaaaccaatatcatcagac 18037674  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  18037675 caacccaagtgggtt 18037689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 27476733 - 27476826
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaatacca 217  Q
    ||||||||||||||||| |||||||| |||||| |||||| |||||| |||||||| ||  | |||| |||||||| |||||||||||||||||    
T  27476733 aagaagctaaattagcccacctaaatcggcaccagagagaatcaaacttgagatctcgaggaggagcacactcctaagtcccaagccaatacca 27476826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 125 - 237
Target Start/End: Complemental strand, 44126509 - 44126396
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcac-cgagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||||||||||||||||||  |||||| ||||| |||||| || |   | |||| |||||| |||||||| | |||||||||||  |    
T  44126509 aagaagctaaattagcctacctaaattggcactagagagaatcaaatctgagacctcgtggaggagcacactcccaggtcccaggtcaataccaccaggc 44126410  T
Q  224 caacccaagtgggt 237  Q
    ||||||||||||||    
T  44126409 caacccaagtgggt 44126396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 19940834 - 19940948
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    |||||||||||  |||| || ||||||||||||| ||||| |||||||||||| ||| |  | |||| |||||| ||| ||||||| || ||||||| ||    
T  19940834 aagaagctaaaccagcccacataaattggcaccggagagaatcaaacctgagaccttaaggaggagcacactccaaggacccaagctaacaccaccagac 19940933  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  19940934 caacccaagtgggtt 19940948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 4825049 - 4824975
Alignment:
Q  160 gagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtg 234  Q
    |||| |||||||||||| |||||| | |||| |||||| |||||||||||||| |||| || |||||||||||||    
T  4825049 gagaatcaaacctgagaccttgaagaggagcacactccaaggtcccaagccaacaccatcagaccaacccaagtg 4824975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 50901695 - 50901581
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccgagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaa-taccaccatac 223  Q
    ||||||||||||||||| |||||||||||||| |||||| || ||  ||||| || ||  | |||| |||| | |||||||||||||| |||||| |  |    
T  50901695 aagaagctaaattagcccacctaaattggcactgagagaatcgaatttgagacctcgaggaggagcacactaccaggtcccaagccaattaccactaggc 50901596  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  50901595 caacccaagtgggtt 50901581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 37047057 - 37046985
Alignment:
Q  165 tcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||||||||||| |||||  | |||| |||||| |||||||||||||| ||||||| |||||||||||||||||    
T  37047057 tcaaacctgagaccttgag-aggagcacactccaaggtcccaagccaacaccaccagaccaacccaagtgggtt 37046985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 238
Target Start/End: Complemental strand, 952623 - 952511
Alignment:
Q  127 gaagctaaattagcctacctaaattggcaccgag-agattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatacca 225  Q
    |||||||||||| || |||||||||| || || | ||| || |||||||||  ||||  | |||| |||||| |||||||||||||| ||||||| ||||    
T  952623 gaagctaaattaacccacctaaattgacatcggggagaatctaacctgagactttgaggatgagcacactcccaggtcccaagccaacaccaccagacca 952524  T
Q  226 acccaagtgggtt 238  Q
    || ||||||||||    
T  952523 actcaagtgggtt 952511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 24730495 - 24730387
Alignment:
Q  128 aagctaaattagcctacctaaattggcaccga-gagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaa 226  Q
    |||||||||||||| ||| ||||||||||||| |||  ||||||||| || |||||| | |||| |||||| || || |||| ||||||||| |  ||||    
T  24730495 aagctaaattagcccacccaaattggcaccgaggaggatcaaacctgggaccttgaagaggagcacactcccagatctcaagacaataccactaggccaa 24730396  T
Q  227 cccaagtgg 235  Q
    |||||||||    
T  24730395 cccaagtgg 24730387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 236
Target Start/End: Complemental strand, 17297100 - 17296986
Alignment:
Q  124 aaagaagctaaattagcctacctaaattggcacc--gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccat 221  Q
    |||||||||||||||||| ||| |||||||||||  | |||| |||||| ||||| |||||  | |||| |||||| ||||||||||| |  ||||| |     
T  17297100 aaagaagctaaattagcccacccaaattggcaccgggggagaatcaaacatgagaccttgaggaggagcacactccaaggtcccaagctaccaccacaag 17297001  T
Q  222 accaacccaagtggg 236  Q
     ||||||||||||||    
T  17297000 cccaacccaagtggg 17296986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 238
Target Start/End: Complemental strand, 34228984 - 34228874
Alignment:
Q  128 aagctaaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaa 226  Q
    |||| ||| ||||| ||| |||||||||||| ||||| || ||||||||| |||||  | || | |||||| |||||||||||||| ||||||| |||||    
T  34228984 aagccaaactagcccaccaaaattggcaccggagagaatccaacctgagaccttgag-aggaacacactccgaggtcccaagccaacaccaccagaccaa 34228886  T
Q  227 cccaagtgggtt 238  Q
    | ||||||||||    
T  34228885 ctcaagtgggtt 34228874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 238
Target Start/End: Complemental strand, 51814605 - 51814494
Alignment:
Q  128 aagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaa 226  Q
    |||||||||||||| ||| ||||||||||| |||||| || ||||||||| |||||  | |||| |||||  || || |||| |||||||| ||  ||||    
T  51814605 aagctaaattagcccacccaaattggcaccggagagaatcgaacctgagaccttgaggaggagcacactctcagatctcaagtcaataccatcaggccaa 51814506  T
Q  227 cccaagtgggtt 238  Q
    ||||||||||||    
T  51814505 cccaagtgggtt 51814494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 19528333 - 19528403
Alignment:
Q  168 aacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    ||||||||| |||||  | |||| ||||| ||| |||||||||||||||||||  ||||||||||||||||    
T  19528333 aacctgagaccttgaggaggagcacactcatagatcccaagccaataccaccaggccaacccaagtgggtt 19528403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 9165179 - 9165271
Alignment:
Q  147 aaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    ||||||||||| |||||| |  |||||||||  ||||  | |||| |||||| |||||||||||||||||||| |  ||||||||||||||||    
T  9165179 aaattggcaccagagagaattgaacctgagactttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 9165271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 15581166 - 15581217
Alignment:
Q  187 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||| |||||| |||||||||||||| |||||||  ||||||||||||||||    
T  15581166 gagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 15581217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 239
Target Start/End: Original strand, 31794226 - 31794341
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| ||| |||||| |||| ||| || || |||   ||| |||||  | |||| |||||| | |||||||||||||||||| |  |    
T  31794226 aagaagctaaattagcccacccaaattgacaccagagggaatcgaactctagaccttgaggaggagcacactcccaagtcccaagccaataccactaggc 31794325  T
Q  224 caacccaagtgggttc 239  Q
    ||||||||||||||||    
T  31794326 caacccaagtgggttc 31794341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 33700756 - 33700847
Alignment:
Q  146 taaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtggg 236  Q
    |||||||||||| |||||| || ||||||||| |||||  | |||| |||||| || | ||||||||||||||| |  ||||||||||||||    
T  33700756 taaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccagattccaagccaataccactaggccaacccaagtggg 33700847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 40257450 - 40257399
Alignment:
Q  187 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||| |||||| ||||| ||||||||||||||||  ||||||||||||||||    
T  40257450 gagcacactcccaggtctcaagccaataccaccaggccaacccaagtgggtt 40257399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 10526937 - 10526823
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    |||||||||||||| || ||| |||||| | || |||||| || || |||||| |||||  | ||||  ||||| ||||||||||||||||||||   ||    
T  10526937 aagaagctaaattaacccacccaaattgactccagagagaatcgaatctgagaccttgaggaggagcaaactcccaggtcccaagccaataccactggac 10526838  T
Q  224 caacccaagtgggtt 238  Q
    |||||||| ||||||    
T  10526837 caacccaaatgggtt 10526823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 39012392 - 39012291
Alignment:
Q  137 tagcctacctaaattggcaccgagag-attcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgg 235  Q
    ||||| ||| |||||||||||||| | | |||||||| ||| |||||  |||||| |||||| |||||||||||||| ||||| |  |||||| ||||||    
T  39012392 tagcccaccgaaattggcaccgaggggaatcaaacctaagaccttgag-aagagcacactccaaggtcccaagccaacaccactaggccaaccaaagtgg 39012294  T
Q  236 gtt 238  Q
    |||    
T  39012293 gtt 39012291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 44961879 - 44961765
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| ||| |||||| |||  |||||| || ||||||||| | |||  | |||| ||||| ||  || ||||| |||||||||  ||    
T  44961879 aagaagctaaattagcccacccaaattgacactagagagaatcgaacctgagaccctgaggaggagcacactcttaaatctcaagctaataccacctgac 44961780  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  44961779 caacccaagtgggtt 44961765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 1690108 - 1690153
Alignment:
Q  193 actcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    ||||| |||||||||||||||||||||| |||||  ||||||||||    
T  1690108 actcccaggtcccaagccaataccaccagaccaattcaagtgggtt 1690153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 2220011 - 2219971
Alignment:
Q  199 aggtcccaagccaataccaccataccaacccaagtgggttc 239  Q
    |||| ||||||||||||||||| | ||||||||||||||||    
T  2220011 aggttccaagccaataccaccagaacaacccaagtgggttc 2219971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 15786317 - 15786393
Alignment:
Q  159 agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgg 235  Q
    ||||| || ||||||||| |||||  | |||| |||||| || |||||||||||||| || | ||||||||||||||    
T  15786317 agagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatactactagaccaacccaagtgg 15786393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 218
Target Start/End: Complemental strand, 30420402 - 30420330
Alignment:
Q  147 aaattggca-ccgagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccac 218  Q
    ||||||||| ||||||||||| |||||||||| ||||  | |||| ||||||||  ||||||||||| |||||    
T  30420402 aaattggcaaccgagagattcgaacctgagatgttgaggaggagcacactcctatatcccaagccaaaaccac 30420330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 36371550 - 36371470
Alignment:
Q  158 gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||||| || ||||| ||| |||||  | |||| |||||| |||| ||||||||||||||| |  ||||||||||||||||    
T  36371550 gagagaatcgaacctcagaccttgaggaggagcacactcccaggttccaagccaataccactaggccaacccaagtgggtt 36371470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 37400313 - 37400273
Alignment:
Q  199 aggtcccaagccaataccaccataccaacccaagtgggttc 239  Q
    ||||| |||||||||||||||| |||||||||||| |||||    
T  37400313 aggtctcaagccaataccaccagaccaacccaagttggttc 37400273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 16991656 - 16991542
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| || |||||||||| || ||||| ||||| |||||| ||  || |||||  |||||| || |||||||||||||||||||  |    
T  16991656 aagaagctaaattagcccacataaattggcatcggagagaatcaaaactgagacctcaaagaagagtacactcccagatcccaagccaataccaccaggc 16991557  T
Q  224 caacccaagtgggtt 238  Q
    |||||||| ||||||    
T  16991556 caacccaaatgggtt 16991542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 10499071 - 10499185
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| ||| |||||| || || ||||| || ||||||||| ||  |  ||||||  ||||| || |||||||||||||||||||  |    
T  10499071 aagaagctaaattagcccacccaaattgacatcggagagaatcgaacctgagacctcaaggaagagcagactcccagatcccaagccaataccaccaggc 10499170  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  10499171 caacccaagtgggtt 10499185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 27093345 - 27093437
Alignment:
Q  147 aaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    ||||||||||| |||||| |||||||||||| |||||  | |||| |||||| | || ||||||||||||||| |  ||||||||||||||||    
T  27093345 aaattggcaccagagagaatcaaacctgagaccttgaggaggagcacactcccaagttccaagccaataccactaggccaacccaagtgggtt 27093437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 125 - 220
Target Start/End: Complemental strand, 44069872 - 44069776
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccacca 220  Q
    ||||||||||| ||||| ||||||||||||||| || ||| |||||||||||| |||||  | |||| |||||| || || |||||||| |||||||    
T  44069872 aagaagctaaactagcccacctaaattggcaccggaaagaatcaaacctgagaccttgaggaggagcacactccaagatctcaagccaacaccacca 44069776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 46518708 - 46518628
Alignment:
Q  158 gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||||| |||||||||| | |||||  | |||| |||||| || ||||||||||||||||| || ||||||||||||||||    
T  46518708 gagagaatcaaacctgaaaccttgaggaggagcacactcccagatcccaagccaataccactatgccaacccaagtgggtt 46518628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 231
Target Start/End: Complemental strand, 2667976 - 2667869
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||| ||||| |||||||||| |||  |||| | || ||||||||| || ||  |||||| |||||| || |||||||||||||||||||  |    
T  2667976 aagaagctaaactagcccacctaaattgacactagagataatcgaacctgagacctcgaggaagagcacactcccagatcccaagccaataccaccaggc 2667877  T
Q  224 caacccaa 231  Q
    ||||||||    
T  2667876 caacccaa 2667869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 231
Target Start/End: Original strand, 4844473 - 4844580
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| ||  |||||||||||| ||||| || | ||||||| || ||  | |||| |||||| || ||||||| ||||||||||| ||    
T  4844473 aagaagctaaattagcccacacaaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagac 4844572  T
Q  224 caacccaa 231  Q
    ||||||||    
T  4844573 caacccaa 4844580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 231
Target Start/End: Original strand, 4870169 - 4870276
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| ||  |||||||||||| ||||| || | ||||||| || ||  | |||| |||||| || ||||||| ||||||||||| ||    
T  4870169 aagaagctaaattagcccacacaaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagac 4870268  T
Q  224 caacccaa 231  Q
    ||||||||    
T  4870269 caacccaa 4870276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 17554841 - 17554778
Alignment:
Q  168 aacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaa 231  Q
    ||||||||  |||||  |||||| |||||| |||||||||||||||||||||| ||||||||||    
T  17554841 aacctgagcccttgaggaagagcacactcccaggtcccaagccaataccaccaaaccaacccaa 17554778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 28703366 - 28703480
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||| || ||| |  ||||||||||| |||||| || ||||||||| |||||| | |||| |||||| || |||||||| |||| |||   ||    
T  28703366 aagaagctaaactaacctcctcaaattggcaccagagagaatcgaacctgagaccttgaagaggagcacactcccagatcccaagctaatatcactggac 28703465  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  28703466 caacccaagtgggtt 28703480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 36720495 - 36720381
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    |||||||||||  |||| |||||||||| |||  |||||| || ||||||| | || ||  | |||| |||||| |  ||||||||||||||||||| ||    
T  36720495 aagaagctaaaccagcccacctaaattgacactagagagaatcgaacctgaaacctcgaggaggagcacactcccatatcccaagccaataccaccagac 36720396  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  36720395 caacccaagtgggtt 36720381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 47810718 - 47810820
Alignment:
Q  137 tagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgg 235  Q
    ||||| ||| |||||||||||| ||||| ||||||| |||| ||||   | |||| |||||| | | || ||||||||||||||| ||||||||||||||    
T  47810718 tagcccacccaaattggcaccggagagaatcaaacccgagaccttgcggaggagcacactcccaagaccaaagccaataccaccagaccaacccaagtgg 47810817  T
Q  236 gtt 238  Q
    |||    
T  47810818 gtt 47810820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 54990816 - 54990703
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccga-gagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| |||||||||| || ||| |||| || ||||||||| |||||  | |||| | |||| |||||||||||||| | ||| | |     
T  54990816 aagaagctaaattagcccacctaaattgccatcgaggagaatcgaacctgagaccttgaggaggagcacgctccaaggtcccaagccaacaacacta-aa 54990718  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  54990717 caacccaagtgggtt 54990703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 5166540 - 5166484
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccgagagattcaaacctgagatcttga 182  Q
    ||||||||||||||||| |||||| ||||||||| |||| || |||||||||||||||    
T  5166540 aagaagctaaattagccaacctaacttggcaccg-gagaatcgaacctgagatcttga 5166484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 14186748 - 14186648
Alignment:
Q  138 agcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtggg 236  Q
    |||| |||||||||| ||||| ||||| || ||||||||| |||||  | |||| |||||| |||||||||| ||||||||| |  ||||||||||||||    
T  14186748 agcccacctaaattgacaccggagagaatcgaacctgagaccttgaggaggagcacactcc-aggtcccaagacaataccactaggccaacccaagtggg 14186650  T
Q  237 tt 238  Q
    ||    
T  14186649 tt 14186648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 238
Target Start/End: Original strand, 31520557 - 31520681
Alignment:
Q  114 ttttgttctgaaagaagctaaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaa 212  Q
    ||||||| ||||| |||||||||||||| ||  |||||| ||| | ||||| |||||||| ||| || ||  | |||| |||||| || |||||||||||    
T  31520557 ttttgttttgaaa-aagctaaattagcccactcaaattgacactggagagaatcaaacctaagacctcgaggaggagcacactcccagatcccaagccaa 31520655  T
Q  213 taccaccataccaacccaagtgggtt 238  Q
    | ||||||  ||||||||||||||||    
T  31520656 tgccaccaggccaacccaagtgggtt 31520681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 2597245 - 2597297
Alignment:
Q  187 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggttc 239  Q
    |||| ||||||||  ||| ||||||||||||||| ||||||||||||||||||    
T  2597245 gagcacactcctaaatccgaagccaataccaccagaccaacccaagtgggttc 2597297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 9832545 - 9832497
Alignment:
Q  190 cgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||||||| |||||||||||||||||||||   ||||||||||||||||    
T  9832545 cgcactcccaggtcccaagccaataccaccgggccaacccaagtgggtt 9832497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 242
Target Start/End: Original strand, 37788461 - 37788545
Alignment:
Q  158 gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggttctct 242  Q
    |||||| || ||||||||| |||||  | |||| ||||||||||| ||||| |||||||||    ||||||||||||||||||||    
T  37788461 gagagaatcgaacctgagaccttgaggaggagcacactcctaggttccaagtcaataccactgggccaacccaagtgggttctct 37788545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 8051253 - 8051214
Alignment:
Q  199 aggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  8051253 aggtcccaagccaataccaccaggccaacccaagtgggtt 8051214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 10445101 - 10445216
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaa-taccaccata 222  Q
    ||||||||||||||||| ||  ||||| ||||| |||||| || ||||||||| || ||  | |||| |||||| |||||||||||||| | |||| |      
T  10445101 aagaagctaaattagcccactcaaattagcaccagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaattgccactagg 10445200  T
Q  223 ccaacccaagtgggtt 238  Q
    ||||||||||||||||    
T  10445201 ccaacccaagtgggtt 10445216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 3055064 - 3054994
Alignment:
Q  168 aacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||||||||||||||  |  ||| | |||| |||||||||||||| |||||||  ||||||||||||||||    
T  3055064 aacctgagatcttgaggagaagcacgctccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 3054994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 14339724 - 14339610
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcac-cgagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| |||| |||||||||  | |||| || |||||||||  ||||  | |||| |||||| |  |||||||||||||||||||  |    
T  14339724 aagaagctaaattagcccaccttaattggcactagggagaatcgaacctgagacattgaggaggagcacactcccaaatcccaagccaataccaccaggc 14339625  T
Q  224 caacccaagtgggtt 238  Q
    ||| |||| ||||||    
T  14339624 caatccaactgggtt 14339610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 18316523 - 18316573
Alignment:
Q  187 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggt 237  Q
    |||| |||||| |||||||||||||  ||||||| ||||||||||||||||    
T  18316523 gagcacactccaaggtcccaagccagcaccaccagaccaacccaagtgggt 18316573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 19716309 - 19716199
Alignment:
Q  127 gaagctaaattagcctacctaaattggcaccgag-agattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatacca 225  Q
    ||||||||||||||| ||| |||||| ||||| | ||| || |||| |||| |||||  | |||| ||||||  ||||||||||||| ||||||||  ||    
T  19716309 gaagctaaattagcccacccaaattgtcaccggggagaatcgaaccagagaccttgaggaggagcacactccatggtcccaagccaacaccaccatgtca 19716210  T
Q  226 acccaagtggg 236  Q
    |||||| ||||    
T  19716209 acccaaatggg 19716199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 24478189 - 24478155
Alignment:
Q  204 ccaagccaataccaccataccaacccaagtgggtt 238  Q
    ||||||||||||||||| |||||||||||||||||    
T  24478189 ccaagccaataccaccaaaccaacccaagtgggtt 24478155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 40268602 - 40268489
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccgag-agattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||| || || ||| ||||||||| || | ||| || ||||||||| ||| || | |||| |||||| |||||||||||||| |||||||  |    
T  40268602 aagaagctaaactaacccaccgaaattggcatcggggagaatcgaacctgagacctt-aagaggagcccactccaaggtcccaagccaacaccaccaggc 40268504  T
Q  224 caacccaagtgggtt 238  Q
     ||||||||||||||    
T  40268503 aaacccaagtgggtt 40268489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 47236935 - 47237029
Alignment:
Q  127 gaagctaaattagcctacctaaattggcaccgag-agattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccacca 220  Q
    |||||||||| |||| ||| |||||||||||| | ||| || ||| ||||| |||||| | |||| ||||||  |||||||| ||||||||||||    
T  47236935 gaagctaaataagcccacccaaattggcaccggggagaatcgaacatgagaccttgaagaggagcacactcccgggtcccaaaccaataccacca 47237029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 239
Target Start/End: Complemental strand, 4222237 - 4222140
Alignment:
Q  143 acctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggttc 239  Q
    |||||||||| |||| |||||| || ||||| |||  ||||  | |||| |||||| || ||||||||||||||||| |  |||||||||||||||||    
T  4222237 acctaaattgacaccagagagaatcgaacctaagactttgaggaggagcacactcccagatcccaagccaataccactaagccaacccaagtgggttc 4222140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 26871535 - 26871580
Alignment:
Q  193 actcctaggtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    ||||| |||||||||||||| |||||||  ||||||||||||||||    
T  26871535 actccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 26871580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 240
Target Start/End: Original strand, 30510164 - 30510277
Alignment:
Q  128 aagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaa 226  Q
    |||||||||||||| || || |||| |||  |||||| || ||||||||| || ||  | ||||  ||||||||||||||||||| ||||||||   |||    
T  30510164 aagctaaattagcccacttagattgacactagagagaatcgaacctgagacctcgagaaggagcatactcctaggtcccaagccagtaccaccaggacaa 30510263  T
Q  227 cccaagtgggttct 240  Q
    ||||||||| ||||    
T  30510264 cccaagtggattct 30510277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 42799772 - 42799821
Alignment:
Q  187 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtggg 236  Q
    |||| |||||| |||||||||||||| |||||||  ||||||||||||||    
T  42799772 gagcacactccaaggtcccaagccaacaccaccaggccaacccaagtggg 42799821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 47079737 - 47079700
Alignment:
Q  202 tcccaagccaataccaccataccaacccaagtgggttc 239  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  47079737 tcccaagccaacaccaccagaccaacccaagtgggttc 47079700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 53413037 - 53412948
Alignment:
Q  147 aaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgg 235  Q
    ||||||||||| |||||| |  ||||||||| |||||  | |||| |||||| ||||  |||||||||||||| | ||||||||||||||    
T  53413037 aaattggcaccagagagaattgaacctgagaccttgaggaggagcacactcccaggttacaagccaataccactagaccaacccaagtgg 53412948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 32651434 - 32651494
Alignment:
Q  158 gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccac 218  Q
    |||||| || || ||||||||||||  | |||| |||||| ||||||||||||||||||||    
T  32651434 gagagaatcgaatctgagatcttgaggaggagcacactcccaggtcccaagccaataccac 32651494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 38912 - 38975
Alignment:
Q  172 tgagatcttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgg 235  Q
    ||||||||| || | ||||  |||||||||||||||||||||||||||| ||||||||||||||    
T  38912 tgagatcttaaagatgagcatactcctaggtcccaagccaataccaccagaccaacccaagtgg 38975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 238
Target Start/End: Original strand, 15739 - 15853
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcaccg-agagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||||| ||| ||||||||||||  |||| |||||| ||||| |||||  | ||||  ||||| |  |||||||||||||||||||  |    
T  15739 aagaagctaaattagcccacccaaattggcaccgcggagaatcaaacttgagaccttgaggaggagcatactccaaaatcccaagccaataccaccaggc 15838  T
Q  224 caacccaagtgggtt 238  Q
    ||||  |||||||||    
T  15839 caacttaagtgggtt 15853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 112396 - 112282
Alignment:
Q  125 aagaagctaaattagcctacctaaattggcacc-gagagattcaaacctgagatcttgaataagagcgcactcctaggtcccaagccaataccaccatac 223  Q
    ||||||||||||||| | ||||||||||||||| |||||| || ||||| ||| ||  || | || | |||||| || | |||||||||||| ||||  |    
T  112396 aagaagctaaattagtccacctaaattggcaccggagagaatcgaacctcagacctcaaagaggaccacactcccagattccaagccaatacaaccaggc 112297  T
Q  224 caacccaagtgggtt 238  Q
    |||||||||||||||    
T  112296 caacccaagtgggtt 112282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 15360 - 15397
Alignment:
Q  201 gtcccaagccaataccaccataccaacccaagtgggtt 238  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  15360 gtcccaagccaacaccaccagaccaacccaagtgggtt 15397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 7763 - 7803
Alignment:
Q  199 aggtcccaagccaataccaccataccaacccaagtgggttc 239  Q
    ||||| |||||||||||||||| |||||||||||| |||||    
T  7763 aggtctcaagccaataccaccagaccaacccaagttggttc 7803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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