View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_high_15 (Length: 411)
Name: NF17941_high_15
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 41240605 - 41240245
Alignment:
| Q |
19 |
aatacaaccaacacctagtcctttaactaacaaaacacctaaaaatgcaacttccgaaattgaaatcatggtagggttggttttgggaattggattactt |
118 |
Q |
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| T |
41240605 |
aatacaaccaacacctagtcctttaactaacaaaacacctaaaaatgcaacttccgaaattgaaatcatggtagggttggttttgggaattggattactt |
41240506 |
T |
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| Q |
119 |
ttgtcatcactatacttcatgataaagaaatcatccaaattaatgggagagattgaggtaaagaaaaacaatttagattctcctatgaaaaaggctacaa |
218 |
Q |
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| T |
41240505 |
ttgtcatcactatacttcatgataaagaaatcatccaaattaatgggagagattgaggtaaagaaaaacaatttagattctcctatgaaaaaggctacaa |
41240406 |
T |
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| Q |
219 |
gtgaggggagattaaaaggaggagataataataactcagagcttgtattctttgttgaagatcatgagaggttcaaactggaggatctactaagagctac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41240405 |
gtgaggggagattaaaaggaggagataataataactcagagcttgtattctttgttgaagatcatgagaggttcaaactggaggatctactaagagctac |
41240306 |
T |
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| Q |
319 |
agctgatttgagaagtgaaaacttttggagtagtcttttcaaggtaaaatttgagaataat |
379 |
Q |
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| T |
41240305 |
agctgatttgagaagtgaaaacttttggagtagtcttttcaaggtaaaatttgagaataat |
41240245 |
T |
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