View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17941_high_16 (Length: 410)
Name: NF17941_high_16
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 52209008 - 52209408
Alignment:
| Q |
1 |
tgcttgttaccgttcctggtggtgctgatggaccaagtggagttcttgtttgtgcggaaaattttgttatttataagaatcaggggcatcctgatgttag |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52209008 |
tgcttgttactgttcctggtggtgctgatggaccaagtggagttcttgtttgtgcggaaaattttgttatttataagaatcaggggcatcctgatgttag |
52209107 |
T |
|
| Q |
101 |
ggctgtgattccgagacgtgctgatttgcctgctgagcgtggcgttcttattgtttctgctgctatgcataaattgaagggtggattcttttttcttctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52209108 |
ggctgtgattccgagacgtgctgatttgcctgctgagcgtggcgttcttattgtttctgctgctatgcataaattgaagggtggattcttttttcttctg |
52209207 |
T |
|
| Q |
201 |
cagactgagtacggtgatatctttaaggctacgttggaacatgagggtgatcggatttctgaattgaagattaagtattttgataccattcctgttactt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52209208 |
cagactgagtacggtgatatctttaaggctacgttggaacatgagggtgatcggatttctgaattgaagattaagtattttgataccattcctgttactt |
52209307 |
T |
|
| Q |
301 |
cttcaatgtgtgtgctcaagtcggggttcttgtttgcggcgtctgagtttggaaaccatggtctgtatcagtttaagggaataggggacgatgatgatgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52209308 |
cttcaatgtgtgtgctcaagtcggggttcttgtttgcggcgtctgagtttggaaaccatggtctgtatcagtttaagggaataggggacgatgatgatgt |
52209407 |
T |
|
| Q |
401 |
c |
401 |
Q |
| |
|
| |
|
|
| T |
52209408 |
c |
52209408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 7e-62; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 47718325 - 47718153
Alignment:
| Q |
1 |
tgcttgttaccgttcctggtggtgctgatggaccaagtggagttcttgtttgtgcggaaaattttgttatttataagaatcaggggcatcctgatgttag |
100 |
Q |
| |
|
||||||| || |||||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
47718325 |
tgcttgtgactgttcctggtggtgctgatggccctagtggggtgcttgtttgtgctgaaaattttgttatttataagaatcagggtcatccggatgttag |
47718226 |
T |
|
| Q |
101 |
ggctgtgattccgagacgtgctgatttgcctgctgagcgtggcgttcttattgtttctgctgctatgcataaa |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
47718225 |
ggctgtgattccgagacgtgctgatttgcctgccgagcgtggtgttctcattgtttcggctgctatgcataaa |
47718153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 47855758 - 47855930
Alignment:
| Q |
1 |
tgcttgttaccgttcctggtggtgctgatggaccaagtggagttcttgtttgtgcggaaaattttgttatttataagaatcaggggcatcctgatgttag |
100 |
Q |
| |
|
||||||| || |||||||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
47855758 |
tgcttgtgactgttcctggtggtgctgatggccctagtggggtgcttgtttgtgctgaaaattttgttatttataagaatcagggtcatccggatgttag |
47855857 |
T |
|
| Q |
101 |
ggctgtgattccgagacgtgctgatttgcctgctgagcgtggcgttcttattgtttctgctgctatgcataaa |
173 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
47855858 |
ggctgtgattccaagacgtgctgatttgcctgccgagcgtggtgttctcattgtttcggctgctatgcataaa |
47855930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 258 - 395
Target Start/End: Complemental strand, 47718047 - 47717910
Alignment:
| Q |
258 |
tctgaattgaagattaagtattttgataccattcctgttacttcttcaatgtgtgtgctcaagtcggggttcttgtttgcggcgtctgagtttggaaacc |
357 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||| ||||| || ||||| ||||||||||||||||||||||||||||| || || |||||||| || | |
|
|
| T |
47718047 |
tctgaattgaatattaagtattttgatactattgctgttgctgtatcaatttgtgtgctcaagtcggggttcttgtttgcagcttccgagtttgggaatc |
47717948 |
T |
|
| Q |
358 |
atggtctgtatcagtttaagggaataggggacgatgat |
395 |
Q |
| |
|
||| ||||||| ||||||||||||||||| |||||| |
|
|
| T |
47717947 |
atgcattgtatcaatttaagggaataggggatgatgat |
47717910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 258 - 395
Target Start/End: Original strand, 47856036 - 47856173
Alignment:
| Q |
258 |
tctgaattgaagattaagtattttgataccattcctgttacttcttcaatgtgtgtgctcaagtcggggttcttgtttgcggcgtctgagtttggaaacc |
357 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||| ||||| || ||||| ||||||||||||||||||||||||||||| || || |||||||| || | |
|
|
| T |
47856036 |
tctgaattgaatattaagtattttgatactattgctgttgctgtatcaatttgtgtgctcaagtcggggttcttgtttgcagcttccgagtttgggaatc |
47856135 |
T |
|
| Q |
358 |
atggtctgtatcagtttaagggaataggggacgatgat |
395 |
Q |
| |
|
||| ||||||| ||||||||||||||||| |||||| |
|
|
| T |
47856136 |
atgcattgtatcaatttaagggaataggggatgatgat |
47856173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University