View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_high_17 (Length: 385)
Name: NF17941_high_17
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 16 - 374
Target Start/End: Complemental strand, 10728251 - 10727893
Alignment:
| Q |
16 |
taatgtgtggttagggttactattatggttacaaggggagatgataatgctgccaaatttgtttaaccattgggaatgttggaaacttggaatagtatgt |
115 |
Q |
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| T |
10728251 |
taatgtgtggttagggttactattatggttacaaggggagatgataatgctgccaaatttgtttaaccattgggaatgttggaaacatggaatagtatgt |
10728152 |
T |
|
| Q |
116 |
cgaagaacaaaaaggaaacaaaggggatgagtctcatttggcattcaacgatttgggttttatggaaagctagaaacaatttcattttcaacaatggagt |
215 |
Q |
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||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10728151 |
cgaggaacaaaaaggaaacaaaggggatgagtctcatttagcattcaacgatttgggtcttatggaaagctagaaacaatttcattttcaacaatggagt |
10728052 |
T |
|
| Q |
216 |
gatttcgatgccggagctagtggatgaagtaaaagtgttgtcgtggaggtgggggttaactcggctaacaattccgacatgtttgttttatgaatgatgt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10728051 |
gatttcgatgccggagctagtggatgaagtaaaagtgttgtcgtggaggtgggggttaactcggctaacaattccgacatgtttgttttatgaatgatgt |
10727952 |
T |
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| Q |
316 |
tggaacccaagagattgcctttgtagttcttgagtggggctggtataatgtgcacaggt |
374 |
Q |
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| T |
10727951 |
tggaacccaagagattgcctttgtagttcttgagtggggctggtataatgtgcacaggt |
10727893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 8324588 - 8324402
Alignment:
| Q |
17 |
aatgtgtggttagggttactattatggttacaaggggagatgataatgctgccaaatttgtttaaccattgggaatgttggaaacttggaatagtatgtc |
116 |
Q |
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| T |
8324588 |
aatgtgtggttgagggtgctatattggttacaaggggagatgataatgc-gccaaatttgttcaacctttgtaagt----aagtgttggaatagtatgtc |
8324494 |
T |
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| Q |
117 |
gaagaacaaaaaggaaacaaaggggatgagtctcatttggcattcaacgatttgggttttatggaaagctagaaacaatttcattttcaaca |
208 |
Q |
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|| || ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||||| |
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| T |
8324493 |
gaggagtaaaaaggaaacaaaggggatgagactcatttgacattcaacgatttgggtcatatggaaagttagaaacaattgcattttcaaca |
8324402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 41029688 - 41029725
Alignment:
| Q |
295 |
tgtttgttttatgaatgatgttggaacccaagagattg |
332 |
Q |
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| T |
41029688 |
tgtttgttttatgaatggtgttggaacccaaaagattg |
41029725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 337
Target Start/End: Original strand, 29083182 - 29083230
Alignment:
| Q |
289 |
ccgacatgtttgttttatgaatgatgttggaacccaagagattgccttt |
337 |
Q |
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| T |
29083182 |
ccgacttgcttgttttatgaatggtgttggaacccaaaagaatgccttt |
29083230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 191
Target Start/End: Original strand, 37035537 - 37035565
Alignment:
| Q |
163 |
acgatttgggttttatggaaagctagaaa |
191 |
Q |
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| T |
37035537 |
acgatttgggttttatggaaagctagaaa |
37035565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 335
Target Start/End: Original strand, 29287095 - 29287141
Alignment:
| Q |
289 |
ccgacatgtttgttttatgaatgatgttggaacccaagagattgcct |
335 |
Q |
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| T |
29287095 |
ccgacatgtttgttttatgaatgaagttggaatccaagggactgcct |
29287141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 47820179 - 47820216
Alignment:
| Q |
151 |
atttggcattcaacgatttgggttttatggaaagctag |
188 |
Q |
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| T |
47820179 |
atttggcatgcgacgatttgggttttatggaaagctag |
47820216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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