View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_high_19 (Length: 370)
Name: NF17941_high_19
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 352
Target Start/End: Complemental strand, 10461936 - 10461601
Alignment:
| Q |
17 |
cagaccaatgaagagactttgagagaagctatggcggtgctcagggatatgtttggacccaacatccccgacgctattgacatacttgttccctgctggt |
116 |
Q |
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| T |
10461936 |
cagaccaatgaagagactttgagagaagctatggcggtgctcagggatatgtttggacccaacatccccgacgctattgacatacttgttccctgctggt |
10461837 |
T |
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| Q |
117 |
ggaataacaggtttcagcgcggaagctacagcaactttccgattatctccaatggtaaagttttttataacattaaggtaataaggtttgcttatcatgc |
216 |
Q |
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| T |
10461836 |
ggaataacaggtttcagcgcggaagctacagcaactttccgattatctccaatggtaaagttttttataacattaaggtaataaggtttgcttatcatgc |
10461737 |
T |
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| Q |
217 |
tgcattttcatattatttaatcattgtttgacaattcccctttgaatattttctgctcttaaatatatcaattgatgctatagctatacttgtcttatat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10461736 |
tgcattttcatattatttaatcattgtttgacaattcccctttgaatattttctgctcttaaatatatcaattgatgctatagctatacttgtcttatat |
10461637 |
T |
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| Q |
317 |
cagtgcatccaaagacaaaacaggggatgacctgga |
352 |
Q |
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| T |
10461636 |
cagtgcatccaaagacaaaacaggggatgacctgga |
10461601 |
T |
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