View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17941_high_23 (Length: 355)
Name: NF17941_high_23
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_high_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 13150673 - 13150448
Alignment:
| Q |
13 |
atactaatggcccgtgacaacgaggtattgatcactgcacatgaatctctatataaataaatatgtggcttgtcaaagtaagtatagggcacagcctaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13150673 |
atactaatggcccgtgacaacgaggtattgatcactgcacatgaatctctatataaataaatatgtggcttgtcaaagtaagtatagggcacagcctaat |
13150574 |
T |
|
| Q |
113 |
actcaagttttattacactcctttgtgctatagctctatttcctagcatgatcacatgcaatactttcatnnnnnnngtaagtaagagttcctagctaat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
13150573 |
actcaagttttattacactcctttgtgctatagctctatttcctagcatgatcacatgcaatactttcataaaaa---taagtaaaagttcctagctaat |
13150477 |
T |
|
| Q |
213 |
tttcttatttactctactaaacgataaacgataaa |
247 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |
|
|
| T |
13150476 |
tttcttat------tactaaacgataaacgataaa |
13150448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 13147974 - 13147816
Alignment:
| Q |
12 |
aatactaatggcccgtgacaacgaggtattgatcactgcacatgaatctctatataaataaatatgtggcttgtcaaagtaagtatagggcacagcctaa |
111 |
Q |
| |
|
|||||||||| ||| |||| ||||||||||| |||||||| ||||||||||||||||||| |||| |||| ||| ||||| |||| | || | ||| |
|
|
| T |
13147974 |
aatactaatgacccatgaccacgaggtattggtcactgcatatgaatctctatataaata----tgtgacttgcaaaaataagtttaggactcaacttaa |
13147879 |
T |
|
| Q |
112 |
tactcaagttttattacact-cctttgtgctatagctctatttcctagcatgatcacatgcaa |
173 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || |||| | |||||||||||||||||| |||| |
|
|
| T |
13147878 |
tactcaagctttattacacttcctttgtgttaaagctttctttcctagcatgatcacaagcaa |
13147816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 13153536 - 13153431
Alignment:
| Q |
69 |
ataaatatgtggcttgtcaaagtaagtatagggcacagcctaatactcaagtttt-attacactcctttgtgctatagctctatttcctagcatgatcac |
167 |
Q |
| |
|
||||||||||| |||| ||| |||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||| | ||||| ||||||||||| |
|
|
| T |
13153536 |
ataaatatgtgacttgcaaaaataagtataggactcagcctaatactcaagtttttattacactactttgtgctatagctttctttccaagcatgatcac |
13153437 |
T |
|
| Q |
168 |
atgcaa |
173 |
Q |
| |
|
| |||| |
|
|
| T |
13153436 |
aggcaa |
13153431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University