View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_high_3 (Length: 592)
Name: NF17941_high_3
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 4e-89; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 298 - 468
Target Start/End: Complemental strand, 8533378 - 8533208
Alignment:
| Q |
298 |
aaattatacacgcaattaatacttaaaaatcttatttagtacataatgttttatccttattttcaactgtaatatgaacatggagtatttttagtcacac |
397 |
Q |
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| T |
8533378 |
aaattatacacgcaattaatacttaaaaatcttatttagtacataatgttttatccttattttcaactgtaatatgaacatggagtatttttagtcacac |
8533279 |
T |
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| Q |
398 |
aaaaaatgtatgtgaagccatttcttgccaaacaagcctaacttggtttacataatcaattcagccacgca |
468 |
Q |
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| T |
8533278 |
aaaaaatgtatgtgaagtcatttcttgccaaacaagcctaacttggtttacataatcaattcagccacgca |
8533208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 24 - 288
Target Start/End: Complemental strand, 8533685 - 8533424
Alignment:
| Q |
24 |
gttgatttggtatagttgttcattgacataaatatttaggacacaatataaaatacactatttcatttcacctct-tagtataaaatatcgaggacatca |
122 |
Q |
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| T |
8533685 |
gttgatttggtatagttgttcattgacataaatatttaggatacaatataaaatacactatttcatttcacctctcaagaataaaatatggaggacatca |
8533586 |
T |
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| Q |
123 |
tat-nnnnnnngtgctaacaacactctttttcaacgctttcttaaccacttcactt-gttgtttattattattattacttttttaaaaactacgtgtctt |
220 |
Q |
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| T |
8533585 |
tataaaaagaagtgctaacaacactctttttcaacgctttcttaaccacttcacttagttggttattatttt------ttttctaaaaaccacgtgtctt |
8533492 |
T |
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| Q |
221 |
ttcatatatcataaacnnnnnnnaaagggaaaggatatatcataaactgtaaattcaaattgaatgaa |
288 |
Q |
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| T |
8533491 |
ttcatatatcataaacttttttttaagggaaaggatataccataaactgtaaattcaaattgaatgaa |
8533424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 514 - 584
Target Start/End: Complemental strand, 8533204 - 8533134
Alignment:
| Q |
514 |
taatctatgtaaaggccaaactccttgaacccgatcttctataaatacatcgaccatcttttattcttctc |
584 |
Q |
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| T |
8533204 |
taatctatgtaaatgcctaactccttgaacccgatcttctataaatacatcgaccatcttttattcttctc |
8533134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 417 - 491
Target Start/End: Complemental strand, 8541557 - 8541483
Alignment:
| Q |
417 |
atttcttgccaaacaagcctaacttggtttacataatcaattcagccacgcagatttagaccaccccactaacta |
491 |
Q |
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| T |
8541557 |
atttcttgccaaacaagcctaacttagtttatagaatcaattcagccacactgattgagaccaccccactaacta |
8541483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 419 - 491
Target Start/End: Complemental strand, 8552042 - 8551969
Alignment:
| Q |
419 |
ttcttgccaaacaagcctaacttg-gtttacataatcaattcagccacgcagatttagaccaccccactaacta |
491 |
Q |
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| T |
8552042 |
ttcttgccaaacaagcctaactttcgtttacagaatcaattcagccacactgattaagaccaccccactaacta |
8551969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 419 - 491
Target Start/End: Complemental strand, 43246888 - 43246816
Alignment:
| Q |
419 |
ttcttgccaaacaagcctaacttggtttacataatcaattcagccacgcagatttagaccaccccactaacta |
491 |
Q |
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| T |
43246888 |
ttcttgccaaacaagcctaacttcgtttacagaatcaatgcagccacactgatttagacatccccactaacta |
43246816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 8553247 - 8553193
Alignment:
| Q |
42 |
ttcattgacataaatatttaggacacaatataaaatacactatttcatttcacctct |
98 |
Q |
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| T |
8553247 |
ttcattgacataaatatctaggacac--tataaaatatactatttcatttcatctct |
8553193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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