View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_high_34 (Length: 289)
Name: NF17941_high_34
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 12835086 - 12834842
Alignment:
| Q |
1 |
tgatatccttagaccattatagtgataatctacccacaagtggcataatttttctgattacttaatatcgtgatgattaattacagtatgaaacacgatg |
100 |
Q |
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| T |
12835086 |
tgatatccttagaccattatagtaataatctgcccacaagttgcataatttttctgattacttaatatcgtgatgattaattatagtatgaaacacgatg |
12834987 |
T |
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| Q |
101 |
ccttcatgctcggaacttccaaggataaatacttcaataaaggatttcatcttttcatcacaactgcaccaataccagatctaaatgagaaacttattgt |
200 |
Q |
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| T |
12834986 |
cattcatgctcggaacttctaaggataaatacttcaataaaggatttgatcttttcatcacaactgcaccaataccagatctaaatgagaaacttactgt |
12834887 |
T |
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| Q |
201 |
ttttggtcgggtcgtaaagggagaggacgtagttcaggtaactga |
245 |
Q |
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| T |
12834886 |
ttttggccgggtcgtaaagggagaggacgtagttcaggtaactga |
12834842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 84 - 239
Target Start/End: Original strand, 42252732 - 42252887
Alignment:
| Q |
84 |
cagtatgaaacacgatgccttcatgctcggaacttccaaggataaatacttcaataaaggatttcatcttttcatcacaactgcaccaataccagatcta |
183 |
Q |
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|||||||||||| || || |||||||| ||||| ||||||| ||| || ||| ||||||||| |||||||||||||||||||||| || ||||||||| |
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| T |
42252732 |
cagtatgaaacatgaagcattcatgcttggaacatccaagggaaaacacaccaacaaaggatttgatcttttcatcacaactgcaccgattccagatcta |
42252831 |
T |
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| Q |
184 |
aatgagaaacttattgtttttggtcgggtcgtaaagggagaggacgtagttcaggt |
239 |
Q |
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| T |
42252832 |
aatgagaagcttatcgtgtttgggcaagtcgtcaagggagaggatgttgttcaggt |
42252887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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