View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_high_39 (Length: 255)
Name: NF17941_high_39
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 10208856 - 10209011
Alignment:
| Q |
1 |
ctaattaggacaacaaataacacaaaagaagaaataaaggaagaaataaaccgtagaaagtatccatagcaccgtcaccacaatatttggttcccggtag |
100 |
Q |
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| T |
10208856 |
ctaattaggacaacaaataacacaaaagaagaaataaaggaagaaataaaccgtagaaagtatccatagcaccgtcaccacaatatttggttcccggtag |
10208955 |
T |
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| Q |
101 |
cctatcgtgcttgcctccggcggccaacagtgtcgttcttttgttaatagaagacg |
156 |
Q |
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| T |
10208956 |
cctatcgtgcttacctccggcggccaacagtgtcgctcttttgttaacagaagacg |
10209011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 10209048 - 10209097
Alignment:
| Q |
193 |
gtaatcacactctcagaatctctcataccttactttggcgatttcttttc |
242 |
Q |
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| T |
10209048 |
gtaatcacactctcagaatctctcataccgtactttggcgatttcttttc |
10209097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 33358587 - 33358741
Alignment:
| Q |
1 |
ctaattaggacaacaaataacacaaaagaagaaataaaggaagaaataaaccgtagaaagtatccatagcaccgtcaccacaatatttggttcccggtag |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33358587 |
ctaattaggacaacaaataacacaaaagaagaaa-aaaggaagaaataaactgtagaaagtatccatagcaccgtcaccacaatatttggttcccgctag |
33358685 |
T |
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| Q |
101 |
cctatcgtgcttgcctccggcggccaacagtgtcgttcttttgttaatagaagacg |
156 |
Q |
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| T |
33358686 |
cctatcgtgcttgcctccggctgccaacaatgtcgccctttggttaacagaagacg |
33358741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 41475343 - 41475247
Alignment:
| Q |
60 |
gtatccatagcaccgtcaccacaatatttggttcccggtagcctatcgtgcttgcctccggcggccaacagtgtcgttcttttgttaatagaagacg |
156 |
Q |
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| T |
41475343 |
gtatccatagcaccgtcaccacaatatttggttcccgctagcctattgtgcttgcctccggcggccaacaatgtcgctctttggttaacagaagacg |
41475247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 33358780 - 33358825
Alignment:
| Q |
193 |
gtaatcacactctcagaatctctcataccttactttggcgatttct |
238 |
Q |
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| T |
33358780 |
gtaatcacactctcagaatctctcatacagtactttggcgatttct |
33358825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 8890866 - 8890790
Alignment:
| Q |
2 |
taattaggacaacaaataacacaaaagaagaaataaaggaagaaataaaccgtagaaagtatccatagcaccgtcac |
78 |
Q |
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| T |
8890866 |
taattaggacaacaaataacacaaaagaagaaaaaaaggaagaaataaaccgaagaaagtatccatagtgccgtcac |
8890790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 40883655 - 40883722
Alignment:
| Q |
2 |
taattaggacaacaaataacacaaaagaagaaataaaggaagaaataaaccgtagaaagtatccatag |
69 |
Q |
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| T |
40883655 |
taattaggacaacaaataacacagaagaagaaaaaaaggaagaaataaaccgaagaaagtatccatag |
40883722 |
T |
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