View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_high_41 (Length: 244)
Name: NF17941_high_41
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_high_41 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 39294229 - 39293986
Alignment:
| Q |
1 |
gttccagtaacttccaagtttcggcaactctcttcctcttagaatcagcccttctcttttcactctccaaaagctccttcaatctacagatttccctgtc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39294229 |
gttccagtaacttccaagtttcggcaactctcttcctcttagaatcagcccttcttttttcactctccaaaagctccttcaatctacatatttccctgtc |
39294130 |
T |
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| Q |
101 |
cctctcagctatacaagctcgtaaacctaatactttctcattctcgtccccatgcccgttgcatccccgatgagcagaagtaacaatctgaggtttgaag |
200 |
Q |
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| T |
39294129 |
cctctcagctatacaagcttgtaaatctaatgccttctcattctcgtccccatccccgttacatccccgatgagcagaagtaacagtctgagacttgaag |
39294030 |
T |
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| Q |
201 |
ctgttgagtccattattgaccgccggtgccccaacattaaattc |
244 |
Q |
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| T |
39294029 |
ctactgagtccattattcaccgccggcgccccagcattaaattc |
39293986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 39302209 - 39302068
Alignment:
| Q |
9 |
aacttccaagtttcggcaactctcttcctcttagaatcagcccttctcttttcactctccaaaagctccttcaatctacagatttccctgtccctctcag |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39302209 |
aacttccaagtttcggcaactctcttcctcttagaatcagcccttcttttttcactctccaaaagctccttcaatctacagatttcgttgtccctctcag |
39302110 |
T |
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| Q |
109 |
ctatacaagctcgtaaacctaatactttctcattctcgtccc |
150 |
Q |
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| T |
39302109 |
ctatacaagcttgtaaacctaataccttctcattctcgtccc |
39302068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 17347650 - 17347802
Alignment:
| Q |
1 |
gttccagtaacttccaagtttcggcaactctcttcctcttagaatcagcccttctcttttcactctccaaaagctccttcaatctacagatttccctgtc |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| | |||| |||| |
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| T |
17347650 |
gttccagtaacttccatgtttcggcaactctcttcctcttagaatcagcccttctcttttcactccccaaaagctccttcgatctacataattccttgtc |
17347749 |
T |
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| Q |
101 |
cctctcagctatacaagctcgtaaacctaatactttctcattctcgtccccat |
153 |
Q |
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| T |
17347750 |
cctctcagctatacaagctcgtaaacctaataccttcgcattctcgttcccat |
17347802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 27833419 - 27833367
Alignment:
| Q |
32 |
cttcctcttagaatcagcccttctcttttcactctccaaaagctccttcaatc |
84 |
Q |
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||||| |||||||||| |||||||||||||||||| |||||| | |||||||| |
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| T |
27833419 |
cttccacttagaatcaacccttctcttttcactcttcaaaagttacttcaatc |
27833367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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