View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17941_high_48 (Length: 236)

Name: NF17941_high_48
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17941_high_48
NF17941_high_48
[»] chr4 (2 HSPs)
chr4 (1-221)||(40820506-40820727)
chr4 (34-183)||(40825207-40825355)
[»] chr7 (10 HSPs)
chr7 (3-221)||(20293114-20293333)
chr7 (7-186)||(20302353-20302531)
chr7 (1-203)||(20300263-20300464)
chr7 (1-129)||(20090418-20090545)
chr7 (7-220)||(20169416-20169630)
chr7 (7-173)||(20272357-20272522)
chr7 (19-142)||(20242186-20242308)
chr7 (7-173)||(20230205-20230370)
chr7 (22-203)||(20278071-20278251)
chr7 (125-173)||(20262788-20262836)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 40820506 - 40820727
Alignment:
Q  1 acgcaggagcaattgtgcaaacataagcttctgcatatgtctggtgtaacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaa 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40820506 acgcaggagcaattgtgcagacataagcttctgcatatgtctggtgtaaca-gctacaccttctgcaaattctgaaacttcaaccgcatgcaatttcaaa 40820604  T
Q  101 aacccattttcctttgtactcgtggttttattgctgatccttccacactccaaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40820605 aacccattttcctttgtactcgtggttttattgctgatcctttcacactccaaaggtgtcctcctaacacaccgacccgtccaattatgtatactccatt 40820704  T
Q  201 cttc--tgtttctgggtacaaat 221  Q
    ||||  |||||||||||||||||    
T  40820705 cttctatgtttctgggtacaaat 40820727  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 183
Target Start/End: Original strand, 40825207 - 40825355
Alignment:
Q  34 catatgtctggtgtaacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactcgtggttttattg 133  Q
    |||||||||||||||||  |||  || || ||||||||| | ||||| ||||   ||||||||||||||||||| |||||||||||| || || |||||     
T  40825207 catatgtctggtgtaact-gctgaactttgtgcaaaatcaggaactttaaccatctgcaatttcaaaaacccatcttcctttgtacttgttgtcttatta 40825305  T
Q  134 ctgatccttccacactccaaaggtgtcctcgtaacacaccgacccgtcca 183  Q
     ||| | || |||||| |||| |||||||  ||||||||| ||| |||||    
T  40825306 ttgaccttttcacactgcaaaagtgtccttctaacacacccacctgtcca 40825355  T

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Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 20293333 - 20293114
Alignment:
Q  3 gcaggagcaattgtgcaaacataagcttctgcatatgtctggtgtaacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaa 102  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||| ||||   | ||||||||||||    
T  20293333 gcaggagcaattatgcaaacataagcttctgcatatttctggtgtaaca-gctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaaaa 20293235  T
Q  103 cccattttcctttgtactcgtggttttattgctgatccttccacactccaaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccattct 202  Q
    ||||| |||||||||||| |||||||||||| ||| |||| |||||||||||||||||||| ||||||||| ||| |||||||||||| |||||||||||    
T  20293234 cccatcttcctttgtactggtggttttattgttgaccctttcacactccaaaggtgtcctcctaacacacccaccggtccaattatgtttactccattct 20293135  T
Q  203 tc--tgtttctgggtacaaat 221  Q
    ||  |||||||||||||||||    
T  20293134 tctatgtttctgggtacaaat 20293114  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 186
Target Start/End: Complemental strand, 20302531 - 20302353
Alignment:
Q  7 gagcaattgtgcaaacataagcttctgcatatgtctggtgtaacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaaccca 106  Q
    |||||||| | ||| ||||||||||||||||| |||||||||||| |||||||||||||||||||| | ||||| ||||   ||||||||||||||||||    
T  20302531 gagcaattctccaagcataagcttctgcatatatctggtgtaaca-gctacaccttctgcaaaatcgggaactttaaccatctgcaatttcaaaaaccca 20302433  T
Q  107 ttttcctttgtactcgtggttttattgctgatccttccacactccaaaggtgtcctcgtaacacaccgacccgtccaatt 186  Q
    | ||| |||||||| |||||||||||| ||| |||| |||||| ||||| | | ||| ||||||||| ||  ||||||||    
T  20302432 tcttcttttgtacttgtggttttattgttgaccctttcacactgcaaagatcttctcctaacacacccactagtccaatt 20302353  T

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Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 20300464 - 20300263
Alignment:
Q  1 acgcaggagcaattgtgcaaacataagcttctgcatatgtctggtgtaacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaa 100  Q
    ||||| |||||||| | ||| ||||||||||||||||||||||||| |||| ||||||||||||||||| || | ||||| ||||   |||||| |||||    
T  20300464 acgcatgagcaattctacaagcataagcttctgcatatgtctggtgcaaca-gctacaccttctgcaaattcaggaactttaaccatctgcaatatcaaa 20300366  T
Q  101 aacccattttcctttgtactcgtggttttattgctgatccttccacactccaaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccatt 200  Q
    || |||| |||||||||||| |||||||||||| ||| ||||  |||||  |||| ||||||| | ||||||| ||| |||||||| | | || ||||||    
T  20300365 aatccatcttcctttgtactggtggttttattgttgaccctttaacactgaaaagctgtcctcctgacacacccaccagtccaattgtttctattccatt 20300266  T
Q  201 ctt 203  Q
    |||    
T  20300265 ctt 20300263  T

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Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 20090418 - 20090545
Alignment:
Q  1 acgcaggagcaattgtgcaaacataagcttctgcatatgtctggtgtaacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaa 100  Q
    |||||||||||||| |||||||||||||| |||||||| ||||||| |||| |||||||||||||||||||||| ||||| ||||   | ||||||||||    
T  20090418 acgcaggagcaattatgcaaacataagctgctgcatatttctggtgcaaca-gctacaccttctgcaaaatctggaactttaaccatcttcaatttcaaa 20090516  T
Q  101 aacccattttcctttgtactcgtggtttt 129  Q
    ||||||| |||||||||| | ||||||||    
T  20090517 aacccatcttcctttgtatttgtggtttt 20090545  T

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Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 20169416 - 20169630
Alignment:
Q  7 gagcaattgtgcaaacataagcttctgcatatgtctggtgtaacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaaccca 106  Q
    |||||||| | ||| |||| ||||||||||||||||| |||||||  | | |||||| |||||||||| ||||| || |   || | |||||||||||||    
T  20169416 gagcaattctccaagcataggcttctgcatatgtctgatgtaacagtcaa-accttcagcaaaatctggaactttaatcatttgtagtttcaaaaaccca 20169514  T
Q  107 ttttcctttgtactcgtggttttattgctgatccttccacactccaaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccattcttc-- 204  Q
    | |||||||||||| |||||||||||| ||| |||| |||||| ||||||||||||   |||||||| ||| ||||| ||||||||| |||||| |||      
T  20169515 tcttcctttgtacttgtggttttattgttgaccctttcacactgcaaaggtgtccttcgaacacacccaccggtccagttatgtatattccattgttcta 20169614  T
Q  205 tgtttctgggtacaaa 220  Q
    ||||||||||| ||||    
T  20169615 tgtttctgggttcaaa 20169630  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 173
Target Start/End: Complemental strand, 20272522 - 20272357
Alignment:
Q  7 gagcaattgtgcaaacataagcttctgcatatgtctggtgtaacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaaccca 106  Q
    |||||||| | ||| |||| ||||||||||||||| |||||||| |  || |||||| |||||||||| ||||| || ||  || | |||||||| ||||    
T  20272522 gagcaattctccaagcataggcttctgcatatgtcaggtgtaacgat-taaaccttcagcaaaatctggaactttaatcgtctgtagtttcaaaatccca 20272424  T
Q  107 ttttcctttgtactcgtggttttattgctgatccttccacactccaaaggtgtcctcgtaacacacc 173  Q
    | |||||||||||| ||||||||||||  || |||| | |||| |||||||||| || |||||||||    
T  20272423 tcttcctttgtacttgtggttttattgtggaccctttcgcactgcaaaggtgtcttcctaacacacc 20272357  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 20242308 - 20242186
Alignment:
Q  19 aaacataagcttctgcatatgtctggtgtaacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgta 118  Q
    ||||||||| |||||||| |||| ||||||||  |||| |||||| |||||||||| ||||| ||||   || | ||||| |||||||| ||||||| ||    
T  20242308 aaacataagattctgcatgtgtcaggtgtaact-gctaaaccttcagcaaaatctggaactttaaccatctgtagtttcagaaacccatcttcctttcta 20242210  T
Q  119 ctcgtggttttattgctgatcctt 142  Q
    || |||||||||||| ||| ||||    
T  20242209 cttgtggttttattggtgaccctt 20242186  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 173
Target Start/End: Complemental strand, 20230370 - 20230205
Alignment:
Q  7 gagcaattgtgcaaacataagcttctgcatatgtctggtgtaacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaaccca 106  Q
    |||||||| | |||||||||| |||||||| |||| |||||  |   ||| |||||| |||||||||| ||||| ||||   || | ||||||||||||     
T  20230370 gagcaattctccaaacataagattctgcatctgtcaggtgtccctt-ctaaaccttcagcaaaatctggaactttaaccatctgtagtttcaaaaacccg 20230272  T
Q  107 ttttcctttgtactcgtggttttattgctgatccttccacactccaaaggtgtcctcgtaacacacc 173  Q
    | ||||||| |||  ||||||||||||| |||||||  ||||| ||| ||| ||| | |||||||||    
T  20230271 tcttcctttctacctgtggttttattgccgatccttttacactgcaatggtttccgcctaacacacc 20230205  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 20278251 - 20278071
Alignment:
Q  22 cataagcttctgcatatgtctggtgtaacaagctacaccttctgcaaaatctgaaacttcaaccgcatgcaatttcaaaaacccattttcctttgtactc 121  Q
    |||| ||||||||| |||||||||||||| ||||| | |||| |||||| |||  ||||  ||||  || |||||||||||| ||| ||||||| | |      
T  20278251 cataggcttctgcaaatgtctggtgtaac-agctaaagcttcagcaaaagctggtactttcaccgtctgtaatttcaaaaacgcatcttcctttctccgt 20278153  T
Q  122 gtggttttattgctgatccttccacactccaaaggtgtcctcgtaacacaccgacccgtccaattatgtatactccattctt 203  Q
    |||||||||||| |   ||| | ||||| |||||  || ||| ||||||||| ||| ||||| ||||||  | |||||||||    
T  20278152 gtggttttattgttatccctactacactgcaaagtggttctcctaacacacccaccggtccagttatgtccattccattctt 20278071  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 20262836 - 20262788
Alignment:
Q  125 gttttattgctgatccttccacactccaaaggtgtcctcgtaacacacc 173  Q
    |||||||||||||||||| |||||| ||||||| ||| | |||||||||    
T  20262836 gttttattgctgatcctttcacactgcaaaggtctccgcctaacacacc 20262788  T

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