View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_high_52 (Length: 228)
Name: NF17941_high_52
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_high_52 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 43621128 - 43620916
Alignment:
| Q |
1 |
gcaagtttcctgcaccaaagaaatcaaatgaatgaagatatataaactattgatcaaccaagaaataagtatttttaattccacaatccacatacgtacc |
100 |
Q |
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| T |
43621128 |
gcaagtttcctgcaccaaagaaatcaaatgaatgaagatatataaactattgatcaaccaagaaataagtatttttaattccacaatccacatacgtacc |
43621029 |
T |
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| Q |
101 |
attcaaagatgaaaacaaaagggataaggaatatggttgctactgcttgtctatagaacacaaagatgaaattgttgatgccatgatcaaatgcagcttt |
200 |
Q |
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| T |
43621028 |
attcaaagatgaaaacaaaagggataaggaatatggttgctactgcttgtctatagaacacaaagatgaaattgttgatgccatgatcaaatgcagcttt |
43620929 |
T |
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| Q |
201 |
tgagagtagaaac |
213 |
Q |
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| T |
43620928 |
tgagagtagaaac |
43620916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 213
Target Start/End: Complemental strand, 38762171 - 38762105
Alignment:
| Q |
147 |
ttgtctatagaacacaaagatgaaattgttgatgccatgatcaaatgcagcttttgagagtagaaac |
213 |
Q |
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| T |
38762171 |
ttgtctgtagaaaacaaagacgaaattgttcatgccatggtcgaatgcagcttttgacagaagaaac |
38762105 |
T |
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