View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17941_high_53 (Length: 220)
Name: NF17941_high_53
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_high_53 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 20126810 - 20127002
Alignment:
| Q |
12 |
ataggatgggaagttataagagcgcatgataaatattttgaaaatggcacataggcatgatcatgttttatgagaacaattcttactctacaatatagtt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20126810 |
ataggatgggaagttataagagcgcatgataaatattttgaaaatatcacataggcatgatcatgttttatgagaacaattcttactttacaatatagtt |
20126909 |
T |
|
| Q |
112 |
tagatagatagattattagcaacatcggtgaaggcaacttgaaactaccttgataccatcaggccagagtctgatatcctagccattagaaac |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20126910 |
tagatagatagattattagcaacatcggtgaaggcaacttgaaactaccttgataccatcaggccagagtctgatatcccagccattagaaac |
20127002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University