View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17941_high_54 (Length: 215)

Name: NF17941_high_54
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17941_high_54
NF17941_high_54
[»] chr4 (2 HSPs)
chr4 (16-200)||(52351450-52351634)
chr4 (27-197)||(20297029-20297199)
[»] chr7 (1 HSPs)
chr7 (26-140)||(26706838-26706952)
[»] chr5 (9 HSPs)
chr5 (16-110)||(30474865-30474959)
chr5 (27-135)||(29871681-29871789)
chr5 (30-140)||(30522117-30522227)
chr5 (30-140)||(30562457-30562567)
chr5 (27-140)||(30749138-30749251)
chr5 (44-140)||(30430467-30430563)
chr5 (27-140)||(30399572-30399685)
chr5 (27-140)||(30713917-30714030)
chr5 (16-52)||(30206009-30206045)
[»] chr1 (1 HSPs)
chr1 (26-136)||(7098918-7099028)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 52351450 - 52351634
Alignment:
Q  16 ataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52351450 ataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctag 52351549  T
Q  116 ctttagatcacgtaactctgccaagttgtgccccgtctttgatctgactacgtatacacttactgttcttagggaagataatctt 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52351550 ctttagatcacgtaactctgccaagttgtgccccgtttttgatctgactatgtatacacttactgttcttagggaagataatctt 52351634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 197
Target Start/End: Complemental strand, 20297199 - 20297029
Alignment:
Q  27 aggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatcac 126  Q
    |||||||||||||||||||||||||| ||| || | |||||||  |||| ||||| || || |||||  || |||||||||||  | || ||||||||||    
T  20297199 aggtcttttttacccatcaaattggcttcttgagcttcagatatactgccaacatcttttaagcctttgatactcagttttccaccaagttttagatcac 20297100  T
Q  127 gtaactctgccaagttgtgccccgtctttgatctgactacgtatacacttactgttcttagggaagataat 197  Q
    ||||||||| |||| | | |||  ||||| | || || | ||| ||||||| |||||||||  ||||||||    
T  20297099 gtaactctgtcaagctattccctttctttaaactaacaatgtacacacttaatgttcttagacaagataat 20297029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 26706838 - 26706952
Alignment:
Q  26 gaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatca 125  Q
    ||||| |||||| |||||||||||||| ||| || | |||||||| |||| ||||| || || |||||| || |||||||||||  | || |||||||||    
T  26706838 gaggttttttttccccatcaaattggcttcttgagcttcagataaactgccaacatcttttaagccttcgatactcagttttccaccgaggtttagatca 26706937  T
Q  126 cgtaactctgccaag 140  Q
    |||||||||| ||||    
T  26706938 cgtaactctgtcaag 26706952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 30474865 - 30474959
Alignment:
Q  16 ataattctcggaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttcct 110  Q
    |||||||| ||||||| |||||||||||||||||||| | |||| | ||| ||||||| | ||||||| | || ||||  |||||||||||||||    
T  30474865 ataattcttggaggtcctttttacccatcaaattggcatgtcgagcttcaaataagctaccaacatttcccagaccttgtatgctcagttttcct 30474959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 29871681 - 29871789
Alignment:
Q  27 aggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatcac 126  Q
    ||||||||||||||||||||||| ||| ||  | | |||||||| |||| |||||| | ||  ||||| || |||||||||||  | || ||||||||||    
T  29871681 aggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaatccttcgatactcagttttccaccgagttttagatcac 29871780  T
Q  127 gtaactctg 135  Q
    |||||||||    
T  29871781 gtaactctg 29871789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 30522227 - 30522117
Alignment:
Q  30 tcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatcacgta 129  Q
    ||||||||| | |||| |||||| |||||| | ||||| || || | ||||||||||||||    |||||| ||||||||  |||||||||||||| |||    
T  30522227 tcttttttatctatcagattggcttctcgagcttcagacaaacttccaacattttctaggcaagtaatgcttagttttccccctagctttagatcatgta 30522128  T
Q  130 actctgccaag 140  Q
    | |||||||||    
T  30522127 attctgccaag 30522117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 30562567 - 30562457
Alignment:
Q  30 tcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatcacgta 129  Q
    ||||||||| | |||| |||||| |||||| | ||||| || || | ||||||||||||||    |||||| ||||||||  |||||||||||||| |||    
T  30562567 tcttttttatctatcagattggcttctcgagcttcagacaaacttccaacattttctaggcaagtaatgcttagttttccccctagctttagatcatgta 30562468  T
Q  130 actctgccaag 140  Q
    | |||||||||    
T  30562467 attctgccaag 30562457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 30749138 - 30749251
Alignment:
Q  27 aggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatcac 126  Q
    ||||||||||||||||||||||| ||| ||  | | |||||||| |||| |||||| | ||  ||||  || |||||||||||  | || ||||||||||    
T  30749138 aggtcttttttacccatcaaattagccgcttcagcttcagataaactgccaacattgtttaatcctttgatactcagttttccaccgaggtttagatcac 30749237  T
Q  127 gtaactctgccaag 140  Q
    ||||||||| ||||    
T  30749238 gtaactctgtcaag 30749251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 140
Target Start/End: Original strand, 30430467 - 30430563
Alignment:
Q  44 caaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatcacgtaactctgccaag 140  Q
    |||||| || |||||| | ||||| || || | |||||||||||| | |  |||||| ||||||||| |||||||||||||| |||| |||||||||    
T  30430467 caaatttgcttctcgagcttcagacaaacttccaacattttctagacatgtaatgcttagttttcctcctagctttagatcatgtaattctgccaag 30430563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 30399572 - 30399685
Alignment:
Q  27 aggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatcac 126  Q
    ||||||||||||||||||||||  ||| || || | | |||||| |||| || || || || |||||| || | |||||||||  | || ||||||||||    
T  30399572 aggtcttttttacccatcaaatcagccgcttgagcttgagataaactgccaaaatcttttaagccttcgatacgcagttttccaccgaggtttagatcac 30399671  T
Q  127 gtaactctgccaag 140  Q
    ||||||||| ||||    
T  30399672 gtaactctgacaag 30399685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 140
Target Start/End: Complemental strand, 30714030 - 30713917
Alignment:
Q  27 aggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatcac 126  Q
    ||||||||||||||||||||||| ||| ||  | | ||| |||| |||| |||||| | ||  ||||  || |||||||||||  | || ||||||||||    
T  30714030 aggtcttttttacccatcaaattagccgcttcagcttcaaataaactgccaacattgtttaatcctttgatactcagttttccaccgaggtttagatcac 30713931  T
Q  127 gtaactctgccaag 140  Q
    ||||||||| ||||    
T  30713930 gtaactctgtcaag 30713917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 30206009 - 30206045
Alignment:
Q  16 ataattctcggaggtcttttttacccatcaaattggc 52  Q
    |||||||  ||||||||||||||||||||||||||||    
T  30206009 ataattcctggaggtcttttttacccatcaaattggc 30206045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 7098918 - 7099028
Alignment:
Q  26 gaggtcttttttacccatcaaattggcctctcgaacatcagataagctgctaacattttctaggccttcaatgctcagttttccttctagctttagatca 125  Q
    |||||||||||||||||| |||||||| |||  | | |||||||| || | |||||||| || |||||  ||   ||| |||||| |||  |||||||||    
T  7098918 gaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttgatctccagctttcctcctaaatttagatca 7099017  T
Q  126 cgtaactctgc 136  Q
    |||||||||||    
T  7099018 cgtaactctgc 7099028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University