View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_high_55 (Length: 215)
Name: NF17941_high_55
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_high_55 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 2950167 - 2949983
Alignment:
| Q |
12 |
agattattcttgaatatggatatccattagagtagccaaatagtagaagatgatccaaatattttgacagaaactatccaatggttgaatttcaggaatt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2950167 |
agattattcttgaatatggatatccattagagtagccaaatagtagaagatgatccaaatattttgacagaaactatccaatggttgaatttcaggaatt |
2950068 |
T |
|
| Q |
112 |
ggtttcaagagtgtgtttcttgttactgctcagccttatatttttagcaacggatatcagatcaggttcaacgagaggccttgtc |
196 |
Q |
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| T |
2950067 |
ggtttcaagagtgtgtttcttgttactgctcagccttatatttttagcaacggatatcagatcaggttcaacgagaggccttgtc |
2949983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 2933528 - 2933353
Alignment:
| Q |
12 |
agattattcttgaatatggatatccattagagtagccaaatagtagaagatgatccaaatattttgacagaaactatccaatggttgaatttcaggaatt |
111 |
Q |
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| T |
2933528 |
agattattcttgacaatggatatctacgagagtagccaaatttt---agatgatacaaat-ctttgacataatctttcctatggttgaatttcaggtatt |
2933433 |
T |
|
| Q |
112 |
ggtttcaagagtgtgtttcttgttactgctcagccttatatttttagcaacggatatcagatcaggttcaacgagaggcc |
191 |
Q |
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| T |
2933432 |
ggtttcaagagtgtgtttcttgttactgctcagccttatatatttagcaacggatatcagataaggttcagtgagaggcc |
2933353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 3009325 - 3009425
Alignment:
| Q |
96 |
ttgaatttcaggaattggtttcaagagtgtgtttcttgttactgctcagccttatatttttagcaacggatatcagatcaggttcaacgagaggccttgt |
195 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |||||||||||| |
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| T |
3009325 |
ttgaattacaggaattggtttcaagagtgtgtttcttgttactgctcagccttatatttttagcaatggatatcatataaggttcaatgagaggccttgt |
3009424 |
T |
|
| Q |
196 |
c |
196 |
Q |
| |
|
| |
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|
| T |
3009425 |
c |
3009425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 75 - 196
Target Start/End: Complemental strand, 2924104 - 2923983
Alignment:
| Q |
75 |
ttgacagaaactatccaatggttgaatttcaggaattggtttcaagagtgtgtttcttgttactgctcagccttatatttttagcaacggatatcagatc |
174 |
Q |
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||||||||| || | | |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||| ||||||||||| |
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| T |
2924104 |
ttgacagaatctttgctatggttgaatttcaggaattggtttcaagagtgtgtttctggttacggctcagccttatgtttttagcaatggatatcagata |
2924005 |
T |
|
| Q |
175 |
aggttcaacgagaggccttgtc |
196 |
Q |
| |
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|||||||| |||| |||||||| |
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| T |
2924004 |
aggttcaatgagaagccttgtc |
2923983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 37798938 - 37798834
Alignment:
| Q |
92 |
atggttgaatttcaggaattggtttcaagagtgtgtttcttgttactgctcagccttatatttttagcaacggatatcagatcaggttcaacgagaggcc |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||| |||||||| |||| ||| |
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| T |
37798938 |
atggttgaatttcaggaattggtttcaagagtgtgtttctggttaccatgcagccgtatatttttagcaatggatatcagataaggttcaatgagaagcc |
37798839 |
T |
|
| Q |
192 |
ttgtc |
196 |
Q |
| |
|
||||| |
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|
| T |
37798838 |
ttgtc |
37798834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 4913358 - 4913539
Alignment:
| Q |
12 |
agattattcttgaatatggatatccattagagtagccaaatagtagaagatgatccaaatattttgacagaaactatccaatggttgaatttcaggaatt |
111 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||| ||||| ||||| ||| ||||| || |||||||||||||||||||||||| |
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| T |
4913358 |
agattattcttgtttatggatatccattagagtagccaaattgtagaaaatgatgcaaatcttt-gacagc--ctctccaatggttgaatttcaggaatt |
4913454 |
T |
|
| Q |
112 |
ggtttcaagagtgtgtttcttgttactgctcagccttatatttttagcaacggatatcagatcaggttcaacgagaggccttgtc |
196 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||| |||| ||||||| |
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| T |
4913455 |
ggtttcaagagtgtgtttctggttactgctcagccttatatttttagcaatggatatcagataagcttcaatgagaatccttgtc |
4913539 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 45 - 196
Target Start/End: Original strand, 1503587 - 1503737
Alignment:
| Q |
45 |
agccaaatagtagaagatgatccaaatattttgacagaaactatccaatggttgaatttcaggaattggtttcaagagtgtgtttcttgttactgctcag |
144 |
Q |
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|||||||| | |||||||||| ||||||| | ||||||| || | ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1503587 |
agccaaattgaagaagatgatgcaaatatgt-gacagaatctcttttatgattgaatttcaggaattggtttcaagagtgtgtttcttgttactgctcaa |
1503685 |
T |
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| Q |
145 |
ccttatatttttagcaacggatatcagatcaggttcaacgagaggccttgtc |
196 |
Q |
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||||||||||||||||| ||||||||||| |||||||| |||| ||| |||| |
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| T |
1503686 |
ccttatatttttagcaatggatatcagataaggttcaatgagaagccatgtc |
1503737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 28027656 - 28027534
Alignment:
| Q |
74 |
tttgacagaaactatccaatggttgaatttcaggaattggtttcaagagtgtgtttcttgttactgctcagccttatatttttagcaacggatatcagat |
173 |
Q |
| |
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|||||||||| || || ||||||||||||||||||| || ||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||||||| |
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| T |
28027656 |
tttgacagaatctctcttatggttgaatttcaggaatcggattcaagagtgtgtttctggttagtgctcagccatatatttttagcaatggatatcagat |
28027557 |
T |
|
| Q |
174 |
caggttcaacgagaggccttgtc |
196 |
Q |
| |
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|||||||| |||| |||||||| |
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| T |
28027556 |
aaggttcaatgagatgccttgtc |
28027534 |
T |
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