View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_high_6 (Length: 512)
Name: NF17941_high_6
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 21 - 499
Target Start/End: Complemental strand, 42686270 - 42685792
Alignment:
| Q |
21 |
gtacagaggaactcacttgtccagcagcagaggcatggtttgtgttaagaatagcatttacttcagcatgacaaacataactagaataggaagaacagaa |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42686270 |
gtacagaggaactcacttgtccagcagcagaggcatggtttgtgttaagaatagcatttacttcagcatgacaaacataactagaataggaagaacagaa |
42686171 |
T |
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| Q |
121 |
aaaccattatcaaagtcatcctgattaattaaaagacttgagcgagaacatgattaaggttacaacaagagtgaaatatgatttgaaaacactcacgggt |
220 |
Q |
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| T |
42686170 |
aaaccattatcaaagtcatccttattaatgaaaagacttgagcgagaacatgattaaggttacaacaagagtgaaatatgatttgaaaacactcacgggt |
42686071 |
T |
|
| Q |
221 |
acttggtctccaaaggattcccggtcctagatttctgaaacatataaatagatttatcaatcaatgagaaattttaaatgatagcaaaagaaaaataact |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42686070 |
acttggtctccaaaggattcccggtcctagatttctgaaacatataaatagatttatcaatcaatgagaaattttaaatgatagcaaaagaaaaataact |
42685971 |
T |
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| Q |
321 |
caaactcctgccttaaacacttaacttggcccatggtagcttgtcatcagaacaacctcttggaaatccattataaccaatgcctgccacagaaggnnnn |
420 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42685970 |
caaactcctgccttaaacacttaccttggcccatggtagcttgtcatcagaacaacctcttggaaatccattataaccaatgcctgccacagaaggaaaa |
42685871 |
T |
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| Q |
421 |
nnnnncaaggcataaaacatgtgtttcacaaaaataaatagattggataagagtacagaataaacttaccgagaattat |
499 |
Q |
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| T |
42685870 |
aaaaacaaggcataaaacatgtgtttcacaaaaataaatagattggataagagtacagaataaacttaccgagaattat |
42685792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 404
Target Start/End: Complemental strand, 21185787 - 21185728
Alignment:
| Q |
345 |
cttggcccatggtagcttgtcatcagaacaacctcttggaaatccattataaccaatgcc |
404 |
Q |
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| T |
21185787 |
cttggcccatggtaacttgtcatcagaacaacctcttggaaattcattataaccaatgcc |
21185728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 404
Target Start/End: Complemental strand, 27119385 - 27119326
Alignment:
| Q |
345 |
cttggcccatggtagcttgtcatcagaacaacctcttggaaatccattataaccaatgcc |
404 |
Q |
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| T |
27119385 |
cttggcccatggtaacttgtcatcagaacaacctcttggaaattcattataaccaatgcc |
27119326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 27119485 - 27119424
Alignment:
| Q |
38 |
tgtccagcagcagaggcatggtttgtgttaagaatagcatttacttcagcatgacaaacataa |
100 |
Q |
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| T |
27119485 |
tgtccagca-cagatgcatggtttgtgttaagaatagcatttacttcagcatgacaaacataa |
27119424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 21185887 - 21185826
Alignment:
| Q |
38 |
tgtccagcagcagaggcatggtttgtgttaagaatagcatttacttcagcatgacaaacataa |
100 |
Q |
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| T |
21185887 |
tgtccagca-cagatgcatggtttgtgttaagaatagcatttacttcagcatgacagacataa |
21185826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 27119423 - 27119384
Alignment:
| Q |
217 |
gggtacttggtctccaaaggattcccggtcctagatttct |
256 |
Q |
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| T |
27119423 |
gggtacttagtctccaaaggattcccagtcctagatttct |
27119384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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