View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_high_8 (Length: 466)
Name: NF17941_high_8
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 15 - 451
Target Start/End: Original strand, 9268257 - 9268693
Alignment:
| Q |
15 |
atactcaaatccaaaaacctcaacaacttatatgcgatctcgtgaacacagtcaaaaacaccccgaagcataacctttcctttaggattatgaaagctaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9268257 |
atactcaaatccaaaaacctcaacaacttatatgcgatctcgtgaacacagtcaaaaacaccccgaagcataacctttcctttaggattatgaaagctaa |
9268356 |
T |
|
| Q |
115 |
caccaccaacaagcgtcaacaaagatgcaaaactatcccggcaaaaaacatacagacgatcatcggacttacaccctgtccttctaagcaattcacaaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9268357 |
caccaccaacaagcgtcaacaaagatgcaaaactatcccggcaaaaaacatacagacgatcatcggacttacaccctgtccttctaagcaattcacaaaa |
9268456 |
T |
|
| Q |
215 |
ctccaataacacttcaaggtaaacaccctgcaactttttgtccttcgaatttaagcaaattttcacaaaatccttaatcacagaataagcaatacgccca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9268457 |
ctccaataacacttcaaggtaaacaccctgcaactttttgtccttcgaatttaagcaaattttcacaaaatccttaatcacagaataagcaatacgccca |
9268556 |
T |
|
| Q |
315 |
tttgcataaagatctaccaacagtgaaggaatttccataaacatggaaacagaaaaatattcagaatcattgatataatttgtaaagtaatcatcaataa |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
9268557 |
tttgcataaagatctaccaacagtgaaggaatttccataaacatggaaacagaaaaatattcagaatcattgatgtaatttgtaaagcaatcatcaataa |
9268656 |
T |
|
| Q |
415 |
ttgtcgaagcaccaatcaccgatttacctgtacaaag |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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|
| T |
9268657 |
ttgtcgaagcaccaatcaccgatttacctgtacaaag |
9268693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 448
Target Start/End: Original strand, 9258249 - 9258694
Alignment:
| Q |
15 |
atactcaaatccaaaaacctcaacaacttatatgcgatctcgtgaacacagtcaaaaacaccccgaagcataacctttcctttaggattatgaaagctaa |
114 |
Q |
| |
|
||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| ||| |
|
|
| T |
9258249 |
atactcagatccaaaaacctcaacaactcatctgcgatctcgtgaacacagtcaaaaacaccccgaagcatgacctctcctttaggattctgaaagttaa |
9258348 |
T |
|
| Q |
115 |
caccaccaacaagcgtcaacaaagatgcaaaactatcccggcaaaaaacatacagacgatcatcggacttacaccctgtccttctaagcaattcacaaaa |
214 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||| || ||||||||||||||||||||| |
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|
| T |
9258349 |
cacgaccaacaagcgtcaacaaagatgaaaaactatcccggcaaaaaacatacagaggatcatcatacttacaccgtgcccttctaagcaattcacaaaa |
9258448 |
T |
|
| Q |
215 |
ctccaataacacttcaaggtaaacaccctgcaactttttgtccttcgaatttaagcaaattttcacaaaatccttaatcacagaataagcaatacgccca |
314 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||||||||||||| |||| ||||| || | || |
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|
| T |
9258449 |
ctccaatgacacttcaaggtaaacaccctgcaactttttgtccttcaaatctaaacaaattctcacaaaatccttaatcacggaatcagcaacacacgca |
9258548 |
T |
|
| Q |
315 |
tttgc------------ataaagatctaccaacagtgaaggaatttccataaacatggaaacagaaaaatattcagaatcattgatataatttgtaaagt |
402 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||| || |
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|
| T |
9258549 |
tttgcataccgtgacatataaagagctaccaacagtgaaggaatttccataaacatgaaaacagaaaaatattcagaatcattgatgtaatatgtaaggt |
9258648 |
T |
|
| Q |
403 |
aatcatcaataattgtcgaagcaccaatcaccgatttacctgtaca |
448 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||| |||| |||| |
|
|
| T |
9258649 |
gatcatcaataattctcgaagcaccaatcaccaattcacctctaca |
9258694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 9250178 - 9250448
Alignment:
| Q |
15 |
atactcaaatccaaaaacctcaacaacttatatgcgatctcgtgaacacagtcaaaaacaccccgaagcataacctttcctttaggattatgaaagctaa |
114 |
Q |
| |
|
||||||||||||||||||||||||| || || || |||||| ||||||||||||||||||||||||||| |||||| ||||||||| | | | || |
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|
| T |
9250178 |
atactcaaatccaaaaacctcaacagctcatctgtgatctctcgaacacagtcaaaaacaccccgaagcaaaaccttcattttaggattcttgatgagaa |
9250277 |
T |
|
| Q |
115 |
caccaccaacaagcgtcaacaaagatgcaaaactatcccggcaaaaaacatacagacgatcatcggacttacaccctgtccttctaagcaattcacaaaa |
214 |
Q |
| |
|
|||| |||||||| ||||||| |||||| |||||| ||| ||||||||| | ||| ||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
9250278 |
caccgccaacaagaatcaacaattccacaaaaccatcccgacaacaaacatacaaaggatgatcacacttacaccctacccctctaagcaattcacaaaa |
9250377 |
T |
|
| Q |
215 |
ctccaataacacttcaaggtaaacaccctgcaactttttgtccttcgaatttaagcaaattttcacaaaat |
285 |
Q |
| |
|
|||||| |||||||| |||||| ||| ||||||| ||||| |||| ||| ||| |||| |||||| |||| |
|
|
| T |
9250378 |
ctccaacaacacttctaggtaagcactctgcaacgttttgcacttcaaatctaaacaaactttcacgaaat |
9250448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 15 - 276
Target Start/End: Original strand, 9237654 - 9237915
Alignment:
| Q |
15 |
atactcaaatccaaaaacctcaacaacttatatgcgatctcgtgaacacagtcaaaaacaccccgaagcataacctttcctttaggattatgaaagctaa |
114 |
Q |
| |
|
||||||||||||||| || ||||||||| | ||||||||||||||||||||||| |||||||||||||| |||||| |||||||| | || | | |
|
|
| T |
9237654 |
atactcaaatccaaatacatcaacaactcgtctgcgatctcgtgaacacagtcaacaacaccccgaagcaaaaccttcatattaggattgttaatgggga |
9237753 |
T |
|
| Q |
115 |
caccaccaacaagcgtcaacaaagatgcaaaactatcccggcaaaaaacatacagacgatcatcggacttacaccctgtccttctaagcaattcacaaaa |
214 |
Q |
| |
|
|||||||||| || ||||||||| | |||||| |||||| ||| ||||||||| | | ||||| || || | ||| || |||||||||||||||||| |
|
|
| T |
9237754 |
caccaccaacgagtgtcaacaaatttccaaaaccatcccgacaagaaacatacaaaggctcatcacacgtaaaacctacccctctaagcaattcacaaaa |
9237853 |
T |
|
| Q |
215 |
ctccaataacacttcaaggtaaacaccctgcaactttttgtccttcgaatttaagcaaattt |
276 |
Q |
| |
|
||||| || | ||||||||| | |||||||||||||||| |||| ||| ||| ||||||| |
|
|
| T |
9237854 |
atccaacaaaatttcaaggtagaaaccctgcaactttttgcacttcaaatctaaacaaattt |
9237915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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