View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17941_low_1 (Length: 691)
Name: NF17941_low_1
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_low_1 |
 | |
|
| [»] scaffold0016 (2 HSPs) |
| | |
|
| [»] scaffold0272 (1 HSPs) |
| | |
|
| [»] scaffold0719 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0016 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 60909 - 60675
Alignment:
| Q |
16 |
attgtgatttattgagtctaggtaaagttcctttataggtaaagcttcctctaggttgctatagaaccttcgatgtgggattattgtgagtgctagctgc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
60909 |
attgtgatttattgagtctaggtaaagttcctttataggtaaagcttcctctaggttgctatagaaccttctatgtgggattattgtgagtgctagctgc |
60810 |
T |
|
| Q |
116 |
tttgctactaactacacttgtatatatacagagaaaaaagacaacactgtaaactttgagaagaagaagatttacctttctaattcttggagatagtttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
60809 |
tttgctactaactacacttgtatatatacagagaaaaaagacaacactgtaaactttgagaagaagaagatttacctttctaattcttggagatagtttt |
60710 |
T |
|
| Q |
216 |
atatgctaatctttaaaacattgaactgtacatgt |
250 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
60709 |
atatgctaatctttaaaactttgaactgtacatgt |
60675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 51 - 210
Target Start/End: Complemental strand, 39305 - 39146
Alignment:
| Q |
51 |
taggtaaagcttcctctaggttgctatagaaccttcgatgtgggattattgtgagtgctagctgctttgctactaactacacttgtatatatacagagaa |
150 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39305 |
taggtaaagcttcctctaggttgcaatagaaccttcgatgtgggattattgtgagtgctagctgctttgctactaactacacttgtatatatacagagaa |
39206 |
T |
|
| Q |
151 |
aaaagacaacactgtaaactttgagaagaagaagatttacctttctaattcttggagata |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39205 |
aaaagacaacactgtaaactttgagaagaagaagatttacctttctaattcttggagata |
39146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 39 - 210
Target Start/End: Original strand, 20460 - 20631
Alignment:
| Q |
39 |
aaagttcctttataggtaaagcttcctctaggttgctatagaaccttcgatgtgggattattgtgagtgctagctgctttgctactaactacacttgtat |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
20460 |
aaagttcctttataggtaaagcttcctctacgttgctatagaaccttcgatgtgggactattgtgagtgctagctgctttgctactaactacacttttat |
20559 |
T |
|
| Q |
139 |
atatacagagaaaaaagacaacactgtaaactttgagaagaagaagatttacctttctaattcttggagata |
210 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||| |||||| |
|
|
| T |
20560 |
atatacagagaaaaaaggcaacactgtaaactttgagaagaagcagatttacctttctaagtcttagagata |
20631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0719 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: scaffold0719
Description:
Target: scaffold0719; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 39 - 210
Target Start/End: Original strand, 6387 - 6559
Alignment:
| Q |
39 |
aaagttcctttataggtaaagcttcctctaggttgctatagaaccttcgatgtgggattattgt-gagtgctagctgctttgctactaactacacttgta |
137 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||| |||| | |||||||| || ||||||||||||||||||||||| |
|
|
| T |
6387 |
aaagttccattataggtaaagcttcctctaggttgctatagaaacttagatgtgggactattattgagtgctaactactttgctactaactacacttgta |
6486 |
T |
|
| Q |
138 |
tatatacagagaaaaaagacaacactgtaaactttgagaagaagaagatttacctttctaattcttggagata |
210 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6487 |
tatatacaaagaaaaaagacaacactataaactttgagaagaagaagatttacctttctaattcttggagata |
6559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 42 - 215
Target Start/End: Original strand, 21135598 - 21135753
Alignment:
| Q |
42 |
gttcctttataggtaaagcttcctctaggttgctatagaaccttcgatgtgggattattgtgagtgctagctgctttgctactaactacacttgtatata |
141 |
Q |
| |
|
|||||||||||||||||||||| | |||||| |||||||||||| |||||||| |||||| |||||||||||||||| || ||| |
|
|
| T |
21135598 |
gttcctttataggtaaagcttcttgtaggttaatatagaaccttcaatgtgggactattgtaagtgctagctgctttg----------------ta-ata |
21135680 |
T |
|
| Q |
142 |
tacagagaaaaaagacaacactgtaaactttgagaagaagaagatttacctttctaattcttggagatagtttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||| |
|
|
| T |
21135681 |
tacagagaaaaaagacaacactgtaaactttgagaagaagaaga-ttacctttctaattcttggggataatttt |
21135753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 14551084 - 14551052
Alignment:
| Q |
320 |
gatttccctaacctaaccacccgcattaaactc |
352 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
14551084 |
gatttctctaacctaaccacccgcattaaactc |
14551052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 29452736 - 29452768
Alignment:
| Q |
320 |
gatttccctaacctaaccacccgcattaaactc |
352 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
29452736 |
gatttctctaacctaaccacccgcattaaactc |
29452768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 320 - 352
Target Start/End: Original strand, 29467210 - 29467242
Alignment:
| Q |
320 |
gatttccctaacctaaccacccgcattaaactc |
352 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
29467210 |
gatttctctaacctaaccacccgcattaaactc |
29467242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University