View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_low_11 (Length: 449)
Name: NF17941_low_11
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 52209410 - 52209846
Alignment:
| Q |
1 |
aggcttcgtctgcgagcctgatggaaactgaagagggttttcagcctgtgtttttccagcccaggaaactgaaaaaccttgttaggattgaccaggttga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52209410 |
aggcttcgtctgcgagcctgatggaaactgaagagggttttcagcctgtgtttttccagcccaggaaactgaaaaaccttgttaggattgaccaggttga |
52209509 |
T |
|
| Q |
101 |
gagtttgatgccaattacagatatgaaggtcagcaatctgtttgaagaggagactcctcaaatttttactctttgtgggcgtggacctcgatcttctctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52209510 |
gagtttgatgccaattacagatatgaaggtcagcaatctgtttgaagaggagactcctcaaatttttactctttgtgggcgtggacctcgatcttctctg |
52209609 |
T |
|
| Q |
201 |
aggatattgagaacaggtttggctgttagtgagatggcagtttccaagcttcccggtgtacctagtgctgtttggactgtgaagaagaatgttattgatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52209610 |
aggatattgagaacaggtttggctgttagtgagatggcagtttccaagcttcccggtgtacctagtgctgtttggactgtgaagaagaatgttattgatg |
52209709 |
T |
|
| Q |
301 |
agtttgatgcttatattgttgtttcgttcaccaatgccacacttgtgctttccattggtgagacagtcgaagaagtcagtgacagtggatttttggacac |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
52209710 |
agtttgatgcttatattgttgtttcgttcaccaatgccacactcgtgctttccattggtgagacagtcgaagaagtcagtgacagcggatttttggacac |
52209809 |
T |
|
| Q |
401 |
tactccatccctttcggtttctttgataggtgatgat |
437 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
52209810 |
tactccatccctttcggtttctttgataggtgatgat |
52209846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 6 - 437
Target Start/End: Complemental strand, 47717894 - 47717463
Alignment:
| Q |
6 |
tcgtctgcgagcctgatggaaactgaagagggttttcagcctgtgtttttccagcccaggaaactgaaaaaccttgttaggattgaccaggttgagagtt |
105 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
47717894 |
tcgtctgcgagtctgatggaaacagaagagggttttcagcctgtgtttttccagcccaggagactcaaaaaccttgttaggattgaccaggttgagagtt |
47717795 |
T |
|
| Q |
106 |
tgatgccaattacagatatgaaggtcagcaatctgtttgaagaggagactcctcaaatttttactctttgtgggcgtggacctcgatcttctctgaggat |
205 |
Q |
| |
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||||||| | | |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||| || ||||||||||| |
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| T |
47717794 |
tgatgcctgtcatggatatgaaggtcagtaatctctttgaagaggagactccccaaatttttactctttgtgggcgcggtcctcggtcatctctgaggat |
47717695 |
T |
|
| Q |
206 |
attgagaacaggtttggctgttagtgagatggcagtttccaagcttcccggtgtacctagtgctgtttggactgtgaagaagaatgttattgatgagttt |
305 |
Q |
| |
|
||||||| |||||||| |||||||||||||| |||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
47717694 |
catgagaactggtttggcagttagtgagatggcggtttccaagcttcctggtatacctagtgctgtttggactgttaagaagaatgttatggatgagttt |
47717595 |
T |
|
| Q |
306 |
gatgcttatattgttgtttcgttcaccaatgccacacttgtgctttccattggtgagacagtcgaagaagtcagtgacagtggatttttggacactactc |
405 |
Q |
| |
|
||||| ||||| ||||| || ||||| |||||||||||||||||||| ||||||||||| | || |||||||| |||||||| ||| |||| ||| ||| |
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| T |
47717594 |
gatgcatatatcgttgtgtccttcacaaatgccacacttgtgctttctattggtgagactgctgatgaagtcagcgacagtggttttctggatactgctc |
47717495 |
T |
|
| Q |
406 |
catccctttcggtttctttgataggtgatgat |
437 |
Q |
| |
|
| ||||| | |||||||||||||| |||||| |
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|
| T |
47717494 |
cctccctcgctgtttctttgataggcgatgat |
47717463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 6 - 437
Target Start/End: Original strand, 47856189 - 47856620
Alignment:
| Q |
6 |
tcgtctgcgagcctgatggaaactgaagagggttttcagcctgtgtttttccagcccaggaaactgaaaaaccttgttaggattgaccaggttgagagtt |
105 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||| |||| ||| |||||||||||||||||||||| |||||||||| |
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| T |
47856189 |
tcgtctgcgagtctgatggaaacagaagagggttttcagcctgtgtttttcctgccaaggagactcaaaaaccttgttaggattgacccagttgagagtt |
47856288 |
T |
|
| Q |
106 |
tgatgccaattacagatatgaaggtcagcaatctgtttgaagaggagactcctcaaatttttactctttgtgggcgtggacctcgatcttctctgaggat |
205 |
Q |
| |
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| ||| | || | |||||||||||||| ||||| || ||||| |||||||||||||||||||||||||||||||| || ||||| |||||| ||||||| |
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| T |
47856289 |
taatgtctatcatggatatgaaggtcagtaatctcttcgaagaagagactcctcaaatttttactctttgtgggcgcggtcctcggtcttctttgaggat |
47856388 |
T |
|
| Q |
206 |
attgagaacaggtttggctgttagtgagatggcagtttccaagcttcccggtgtacctagtgctgtttggactgtgaagaagaatgttattgatgagttt |
305 |
Q |
| |
|
||||||| |||||||| |||||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
47856389 |
catgagaactggtttggcggttagtgagatggcggtttccaagcttcctggtatacctagtgctgtttggaccgtgaagaagaatgttatggatgagttt |
47856488 |
T |
|
| Q |
306 |
gatgcttatattgttgtttcgttcaccaatgccacacttgtgctttccattggtgagacagtcgaagaagtcagtgacagtggatttttggacactactc |
405 |
Q |
| |
|
||| | ||||| ||||| || ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| |||| ||| ||| |
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| T |
47856489 |
gattcgtatatcgttgtgtccttcacaaatgccacacttgtgctttccattggtgagactgtcgaagaagtcagcaacagtggttttctggatactgctc |
47856588 |
T |
|
| Q |
406 |
catccctttcggtttctttgataggtgatgat |
437 |
Q |
| |
|
|||||||| | ||||||||||| || |||||| |
|
|
| T |
47856589 |
catcccttgccgtttctttgattggcgatgat |
47856620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 360 - 437
Target Start/End: Original strand, 4190231 - 4190308
Alignment:
| Q |
360 |
gagacagtcgaagaagtcagtgacagtggatttttggacactactccatccctttcggtttctttgataggtgatgat |
437 |
Q |
| |
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||||||||| ||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4190231 |
gagacagtcaaagaagtcactgacaacgggtttttggacactactccatccctttcggtttctttgataggtgatgat |
4190308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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