View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17941_low_12 (Length: 439)

Name: NF17941_low_12
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17941_low_12
NF17941_low_12
[»] chr8 (2 HSPs)
chr8 (1-424)||(31279443-31279853)
chr8 (141-190)||(37651701-37651750)
[»] chr4 (4 HSPs)
chr4 (37-224)||(51743883-51744073)
chr4 (108-225)||(11146289-11146406)
chr4 (153-223)||(44891722-44891792)
chr4 (108-218)||(44892330-44892440)
[»] chr7 (2 HSPs)
chr7 (124-199)||(47677449-47677524)
chr7 (139-222)||(11702262-11702344)
[»] chr2 (2 HSPs)
chr2 (74-189)||(44995677-44995794)
chr2 (155-218)||(16497696-16497759)
[»] chr3 (3 HSPs)
chr3 (109-212)||(36369141-36369244)
chr3 (153-225)||(30626469-30626540)
chr3 (165-201)||(329627-329663)
[»] chr1 (4 HSPs)
chr1 (108-218)||(26852443-26852553)
chr1 (153-223)||(26853092-26853162)
chr1 (166-223)||(39861060-39861116)
chr1 (153-225)||(38460678-38460749)
[»] chr5 (2 HSPs)
chr5 (108-218)||(43513822-43513932)
chr5 (153-223)||(43514470-43514540)
[»] chr6 (1 HSPs)
chr6 (160-219)||(7887642-7887701)


Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 31279443 - 31279853
Alignment:
Q  1 atttaacgatggtggctcactctcgcaacagtatggtatctctgcaatattgtcccggtagtagaaagacggtgaaaaaataattgcaccatttctttgt 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31279443 atttaacgatggtggctcactatcgcaacagtatggtatctctgcaatattgtcccggtagtagaaagacggtgaaaaaataattgcaccatttctttgt 31279542  T
Q  101 taaagtgagtaacttgaacggcctgtaacaagtaaaaggaataaaaaagagaggtgatgtggctaattttaattgaagtgtgttaaaagggtgtattaga 200  Q
    ||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||| ||| |||||||||||||||         
T  31279543 taaagttcgtaacttgaacggcctgtaacaaataaaaggaataaaaaagagaggtgatgtaattaattttaattggagtatgttaaaagggtgta----- 31279637  T
Q  201 gggtgtaaccctagcattcctcataataatctcggcataacgtgcacatcaacacaaccaatcgttgcaagtctatatcctcacaattgtgctccagtgc 300  Q
           ||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31279638 -------accct-gcattcctcgtaataatctcggcataacatgcacatcaacacaaccaatcattgcaagtctatatcctcacaattgtgctccagtgc 31279729  T
Q  301 aagtctatatcattacaaatctctattcaattaat-aattgtggttctattttccaataatcagcatttcgtgatatgttacactcacacccttaatggt 399  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||     
T  31279730 aagtctatatcattacaaatctctattcaattaataaattgtggttctattttccaataatcagcatttcgcgatatgttacactcacacccttaa-ggc 31279828  T
Q  400 tagatgaccaaaccattaccctcca 424  Q
    || ||||||||||||||||| ||||    
T  31279829 taaatgaccaaaccattaccatcca 31279853  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 37651750 - 37651701
Alignment:
Q  141 ataaaaaagagaggtgatgtggctaattttaattgaagtgtgttaaaagg 190  Q
    ||||||||  ||||||||||| ||||||||||||| ||||||||||||||    
T  37651750 ataaaaaaaggaggtgatgtgtctaattttaattggagtgtgttaaaagg 37651701  T

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Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 37 - 224
Target Start/End: Complemental strand, 51744073 - 51743883
Alignment:
Q  37 tatctctgcaatattgtcccggtagtagaaagacggtgaaaaaataattgcaccatttctttgt--taaagtg-agtaacttgaacggcctgtaacaagt 133  Q
    ||||||||||| |||||| | |||||||||||  ||||||||||||| |||||||||| |||||  ||||||  |||||||||||| |||||||| ||||    
T  51744073 tatctctgcaaaattgtcacagtagtagaaaggaggtgaaaaaataactgcaccatttttttgtgttaaagtttagtaacttgaacagcctgtaataagt 51743974  T
Q  134 aaaaggaataaaaaagagaggtgatgtggctaattttaattgaagtgtgttaaaagggtgtattagagggtgtaaccctagcattcctcat 224  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| || || ||||||||||| |||||||||||||||||    
T  51743973 aaaaggaataaaaaagagaggtgatgtggctaattttaattggagtgtgttaaaaaggagtgttagagggtgtgaccctagcattcctcat 51743883  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 225
Target Start/End: Complemental strand, 11146406 - 11146289
Alignment:
Q  108 agtaacttgaacggcctgtaacaagtaaaaggaataaaaaagagaggtgatgtggctaattttaattgaagtgtgttaaaagggtgtattagagggtgta 207  Q
    ||||||||||||  ||||| ||| || ||| ||||| |||  |  ||||||||||| ||||||||||||||||||||||||| |||| |||| | ||||     
T  11146406 agtaacttgaacaacctgttacaggttaaatgaatacaaagaatgggtgatgtggcaaattttaattgaagtgtgttaaaagagtgtgttagggagtgtg 11146307  T
Q  208 accctagcattcctcata 225  Q
      ||||||||| ||||||    
T  11146306 ttcctagcatttctcata 11146289  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 44891792 - 44891722
Alignment:
Q  153 ggtgatgtggctaattttaattgaagtgtgttaaaagggtgtattagagggtgtaaccctagcattcctca 223  Q
    ||||||||||| ||||||||||| ||||||||||||| |||| |||| | ||||  |||||||||| ||||    
T  44891792 ggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccctagcatttctca 44891722  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 44892330 - 44892440
Alignment:
Q  108 agtaacttgaacggcctgtaacaagtaaaaggaataaaaaagagaggtgatgtggctaattttaattgaagtgtgttaaaagggtgtattagagggtgta 207  Q
    ||||||||||||  ||||| ||| || ||| ||||| |||  |  ||||||||||| ||||||||||| ||||||||||||| |||| |||| | ||||     
T  44892330 agtaacttgaacaacctgttacaggttaaatgaatacaaataatgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtg 44892429  T
Q  208 accctagcatt 218  Q
     ||||||||||    
T  44892430 tccctagcatt 44892440  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 47677449 - 47677524
Alignment:
Q  124 tgtaacaagtaaaaggaataaaaaagagaggtgatgtggctaattttaattgaagtgtgttaaaagggtgtattag 199  Q
    ||||||| |||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||| |||| ||||    
T  47677449 tgtaacaggtaaaaggaataaaaatgagaggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttag 47677524  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 11702344 - 11702262
Alignment:
Q  139 gaataaaaaagagaggtgatgtggctaattttaattgaagtgtgttaaaagggtgtattagagggtgtaaccctagcattcctc 222  Q
    |||||||||| | | ||||||||||||||||| |||| |||||| | |||| |||| |||||||||||  ||||||||||||||    
T  11702344 gaataaaaaaaataagtgatgtggctaattttcattggagtgtg-tcaaagagtgtgttagagggtgtgtccctagcattcctc 11702262  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 74 - 189
Target Start/End: Complemental strand, 44995794 - 44995677
Alignment:
Q  74 gaaaaaataattgcaccatttcttt-gttaaagtgagtaacttgaacggcctgtaacaagtaaaaggaataaaaaag-agaggtgatgtggctaatttta 171  Q
    ||||||| || |||||||||| ||| |||||  | || |||| ||||  ||||||||| |||||||||||||||||| |||||||||||||| |||||||    
T  44995794 gaaaaaaaaactgcaccattttttttgttaagtttagcaactggaacaacctgtaacaggtaaaaggaataaaaaaggagaggtgatgtggcaaatttta 44995695  T
Q  172 attgaagtgtgttaaaag 189  Q
    |||| |||||||||||||    
T  44995694 attggagtgtgttaaaag 44995677  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 16497696 - 16497759
Alignment:
Q  155 tgatgtggctaattttaattgaagtgtgttaaaagggtgtattagagggtgtaaccctagcatt 218  Q
    |||||||| ||||||| |||| ||||||||||||| |||| ||||| ||||| || ||||||||    
T  16497696 tgatgtgggtaattttgattggagtgtgttaaaagagtgtgttagatggtgtgactctagcatt 16497759  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 36369244 - 36369141
Alignment:
Q  109 gtaacttgaacggcctgtaacaagtaaaaggaataaaaaagagaggtgatgtggctaattttaattgaagtgtgttaaaagggtgtattagagggtgtaa 208  Q
    |||||||| ||  ||| ||||| ||||||||||||||||||||||||||| |||||||||||||||  |||| |||||||| | || |||||| |||| |    
T  36369244 gtaacttgcacaacctctaacaggtaaaaggaataaaaaagagaggtgatctggctaattttaatttgagtgcgttaaaagagagtgttagagtgtgtga 36369145  T
Q  209 ccct 212  Q
    ||||    
T  36369144 ccct 36369141  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 30626540 - 30626469
Alignment:
Q  153 ggtgatgtggctaattttaattgaagtgtgttaaaagggtgtattagagggtgtaaccctagcattcctcata 225  Q
    |||||||||||||||||| |||| |||||||| |||| |||| |||| | |||| ||||||||||| ||||||    
T  30626540 ggtgatgtggctaatttttattggagtgtgtt-aaagagtgtgttagggagtgtgaccctagcatttctcata 30626469  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 329627 - 329663
Alignment:
Q  165 aattttaattgaagtgtgttaaaagggtgtattagag 201  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  329627 aattttaattgaagtgtgttaaaagagtgtgttagag 329663  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 108 - 218
Target Start/End: Complemental strand, 26852553 - 26852443
Alignment:
Q  108 agtaacttgaacggcctgtaacaagtaaaaggaataaaaaagagaggtgatgtggctaattttaattgaagtgtgttaaaagggtgtattagagggtgta 207  Q
    ||||||||||||  ||||| ||| || ||| ||||| |||  |  ||||||||||| ||||||||||| ||||||||||||| |||| |||| | |||||    
T  26852553 agtaacttgaacaacctgttacaggttaaatgaatacaaagaatgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgta 26852454  T
Q  208 accctagcatt 218  Q
     ||||||||||    
T  26852453 tccctagcatt 26852443  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 26853092 - 26853162
Alignment:
Q  153 ggtgatgtggctaattttaattgaagtgtgttaaaagggtgtattagagggtgtaaccctagcattcctca 223  Q
    ||||||||||| ||||||||||| ||||||||||||| |||| |||| | ||||  |||||||||| ||||    
T  26853092 ggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccctagcatttctca 26853162  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 39861060 - 39861116
Alignment:
Q  166 attttaattgaagtgtgttaaaagggtgtattagagggtgtaaccctagcattcctca 223  Q
    ||||||||||||||||||| |||| ||||||||| | |||| ||||||||||| ||||    
T  39861060 attttaattgaagtgtgtt-aaagagtgtattagggagtgtgaccctagcatttctca 39861116  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 38460678 - 38460749
Alignment:
Q  153 ggtgatgtggctaattttaattgaagtgtgttaaaagggtgtattagagggtgtaaccctagcattcctcata 225  Q
    |||||||||||||||||| |||| |||||||| |||| |||| |||| | ||||  |||||||||| ||||||    
T  38460678 ggtgatgtggctaatttttattggagtgtgtt-aaagagtgtgttagggagtgtgtccctagcatttctcata 38460749  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 218
Target Start/End: Complemental strand, 43513932 - 43513822
Alignment:
Q  108 agtaacttgaacggcctgtaacaagtaaaaggaataaaaaagagaggtgatgtggctaattttaattgaagtgtgttaaaagggtgtattagagggtgta 207  Q
    ||||||||||||  ||||| ||| || ||| ||||| |||  |  ||||||||||| ||||||||||| ||||||||||||| |||| |||| | ||||     
T  43513932 agtaacttgaacaacctgttacaggttaaatgaatacaaataatgggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtg 43513833  T
Q  208 accctagcatt 218  Q
     ||||||||||    
T  43513832 tccctagcatt 43513822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 43514470 - 43514540
Alignment:
Q  153 ggtgatgtggctaattttaattgaagtgtgttaaaagggtgtattagagggtgtaaccctagcattcctca 223  Q
    ||||||||||| ||||||||||| ||||||||||||| |||| |||| | ||||  |||||||||| ||||    
T  43514470 ggtgatgtggcaaattttaattggagtgtgttaaaagagtgtgttagggagtgtgtccctagcatttctca 43514540  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 7887642 - 7887701
Alignment:
Q  160 tggctaattttaattgaagtgtgttaaaagggtgtattagagggtgtaaccctagcattc 219  Q
    ||||| ||||| |||| |||||||||||||||| | ||||| ||||| ||||||||||||    
T  7887642 tggcttattttgattggagtgtgttaaaagggtatgttagaaggtgtgaccctagcattc 7887701  T

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