View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_low_13 (Length: 439)
Name: NF17941_low_13
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 33443546 - 33443963
Alignment:
| Q |
1 |
agatagagaacgagcgcagcgttcttaataaaagtctacggtcacaatctaggttaggatatattggttttttatgtagctaaaacaacagttcgacaac |
100 |
Q |
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| T |
33443546 |
agatagagaacgagcgcagcgttcttaataaaagtctacggtcacaatctaggttaggatatattggttttttatgtagctaaaacaacagttcgacaac |
33443645 |
T |
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| Q |
101 |
aatctaggttgcattggtggtatttgactaaaattctccgtaatataaaaatcacgaggggattgaaatatttaaaacaaacaatatatacaaatttttc |
200 |
Q |
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| T |
33443646 |
aatctaggttgcattgg--gtatttgactacaattctccgtaatataaaaatcacgatgctatagaaatatttaaaacaaacaatatatacaaatttttc |
33443743 |
T |
|
| Q |
201 |
aaa-cattattgtgagagaaactaaagatatatttttgtggcgaacctgatattggggataaaaccattcttgaaaccgggagacaagcagttcttgaag |
299 |
Q |
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| T |
33443744 |
aaaacattattgtgagagaaactaaagatat----ttgtggcgaacctgatattggggataaaaccgttcttgaaaccgggagacaagcagttcttgaag |
33443839 |
T |
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| Q |
300 |
atcagaggctcgcaatttagttgcttccattctttgtttgattatttccattgtgtcacgcaaaattgatttgcaaactttgaggaattaaacaggtggt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33443840 |
atcagaggctcgcaatttagttgcttccattctttgtttgattatttccattgtgtcacgcaaaattgatttgcaaactttgaggaattaaacaggtggt |
33443939 |
T |
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| Q |
400 |
gggaagattgatgagagatattga |
423 |
Q |
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| T |
33443940 |
gggaagattgatgagagatattga |
33443963 |
T |
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