View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_low_15 (Length: 423)
Name: NF17941_low_15
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 12 - 404
Target Start/End: Complemental strand, 42223121 - 42222728
Alignment:
| Q |
12 |
agtgagaagaatggaaaggaaaatggaaccatttcaagtcagagtaaggttcagaagaatagaattgatatgcccattgtaaaacatccagcggccaccc |
111 |
Q |
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| T |
42223121 |
agtgaaaagaatggaaaggaaaatggaaacatttcaagtcagagtaaggttcagaagaatagaattgatacgcccattgtaaaacatccaacggccaccc |
42223022 |
T |
|
| Q |
112 |
aagggcttaaacgttcacctgcgcaataacatgtaaactaaagtagtcaataaatctcaaatagaggaaaagccaaactagaagaccacaatgcaactcc |
211 |
Q |
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| T |
42223021 |
aagggcttaaacgttcacctgcgcaataacatgtaaactaaagtagtcaataaatctcgaatagaggaaaagccaaactagaagaccacaatgcaactcc |
42222922 |
T |
|
| Q |
212 |
cttcgcc-aaaagaagaccactccaaagtacgagcgaaagacaaagtcataaaaccaaactagaattttgctttctaattagagttacaaatgctagaat |
310 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42222921 |
cttcgccaaaaagaagaccactccaaagtacgagcgaaagataaagtcataaaaccaaactagaattttgctttctaattagagttacaaaggctagaat |
42222822 |
T |
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| Q |
311 |
ccacatgccacagtgtgactgagatacaagtctccaaacgaggagtcaatgaataataaaattaagcaaaccttttcattaagtgaacggatta |
404 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42222821 |
ccacatgccacagtgtgactgagatacaagtctcctaacgaggagtcaatgaataataaaattaagcaaaccttttcattaagtgaacggatta |
42222728 |
T |
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