View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_low_16 (Length: 420)
Name: NF17941_low_16
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 374 - 409
Target Start/End: Original strand, 30168411 - 30168446
Alignment:
| Q |
374 |
cccaattttggaagtcctacgtgtctttttcttctc |
409 |
Q |
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| T |
30168411 |
cccaattttggaagtcctacgtgtctttttcttctc |
30168446 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 43245384 - 43245428
Alignment:
| Q |
301 |
aaagggaaatgctgaaatttacaaatgaaacaagcaagaaatgca |
345 |
Q |
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| T |
43245384 |
aaaggaaaatgctgaaatttacgaatgtaacaagcaagaaatgca |
43245428 |
T |
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