View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_low_21 (Length: 379)
Name: NF17941_low_21
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 3117654 - 3117286
Alignment:
| Q |
1 |
tgctgctagctttttatgatgattgtgttgtgtttggtgcatgtgtatgtgtttaggtacatggctatagaatgtcactatggagtgagcacataggagg |
100 |
Q |
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| T |
3117654 |
tgctgctagctttttatgatgattgtgttgtgtttggtgcacgtgtatgtgtttaggtacatggttatagaatgtcactatggagtgagcacataggagg |
3117555 |
T |
|
| Q |
101 |
tgtggaagaatgtttcaagcaaccagagagcattgaatgtgtgagaagaataaggtcattgagtgagtataactggagacaatatgtggctgatgaagta |
200 |
Q |
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| T |
3117554 |
tgtggaagaatgtttcaagcaaccagagagcattgaatgtgtgagaagaataaggtcattgagtgagtataactggagacaatatgtggctgatgaagta |
3117455 |
T |
|
| Q |
201 |
actgaaatgaatggtcatttactgaaatatccacttgaggttgattcaaagggtattgtgaagcctcttgttggctgtgaaacatttcctgatgttggtg |
300 |
Q |
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| T |
3117454 |
actgaaatgaatggtcatttactgaaatatccacttgaggttgattcaaagggtattgtgaagcctcttgttggctgtgaaacatttcctgatgttggtg |
3117355 |
T |
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| Q |
301 |
gaaacataaagggcacctttactgtacttcaagaaaatctcaccatctaaacattttcatccatttcat |
369 |
Q |
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| T |
3117354 |
gaaacataaagggcacctttactgtacttcaagaaaatctcaccatctaaacattttcatccatttcat |
3117286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 3111158 - 3110790
Alignment:
| Q |
1 |
tgctgctagctttttatgatgattgtgttgtgtttggtgcatgtgtatgtgtttaggtacatggctatagaatgtcactatggagtgagcacataggagg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| | |||||||||||||||||||| |
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| T |
3111158 |
tgctgctagctttttatgatgattgtgttgtgtttggtgcatgtgtatgtgttcaggtgcatggctatagaatgtcattgtggagtgagcacataggagg |
3111059 |
T |
|
| Q |
101 |
tgtggaagaatgtttcaagcaaccagagagcattgaatgtgtgagaagaataaggtcattgagtgagtataactggagacaatatgtggctgatgaagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3111058 |
tgtggaagaatgtttcaagcaaccagagagcattgaatgtgtgagaagaataaggtcattgagtgagtataactggagacaatatgtggctgatgaagta |
3110959 |
T |
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| Q |
201 |
actgaaatgaatggtcatttactgaaatatccacttgaggttgattcaaagggtattgtgaagcctcttgttggctgtgaaacatttcctgatgttggtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3110958 |
actgaaatgaatggtcatttactgaaatatccacttgaggttgattcaaagggtattgtgaagcctcttgttggctgtgaaacatttcctgatgttggtg |
3110859 |
T |
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| Q |
301 |
gaaacataaagggcacctttactgtacttcaagaaaatctcaccatctaaacattttcatccatttcat |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3110858 |
gaaacataaagggcacctttactgtacttcaagaaaatctcaccatctaaacattttcatccatttcat |
3110790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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