View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_low_25 (Length: 359)
Name: NF17941_low_25
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 7 - 357
Target Start/End: Original strand, 2029019 - 2029362
Alignment:
| Q |
7 |
tttatcgaatcctttacaaaactcaactaaaatacattcaaactagatacttttaactttaaaataactctaaaagtgacctaaaaatcatatatgattt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2029019 |
tttatcgaatcctttacaaaactcaactaaaatacattcaaactagatacttttaactttaaaataactctaaaagtgacctaaaaatcatatatgattt |
2029118 |
T |
|
| Q |
107 |
cctttcatcaataaaataaattatcatatttgttatcttgtccacaacaaatatattgtatgataactagtaactacttaggtctatatcatattattag |
206 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2029119 |
cctttcttcaataaaataaattatcatatttgttatcttgtccacaacaaatatattgtatga-------taactacttaggtctatatcatattattag |
2029211 |
T |
|
| Q |
207 |
tcaaaaataatataaaatcatatcaattcttgatattttagcatatctctgtcatatcatatcatgtgcatgtgcagcgaataggtccaaatgtctgaaa |
306 |
Q |
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|||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2029212 |
tcaaaaataaaataaaatcatatcaattctttatattttatcatatctctgtcatatcatatcatgtgcatgtgcagcaaataggtccaaatgtctgaaa |
2029311 |
T |
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| Q |
307 |
ttgaatttagcgctcatttactaattcttgcagagatatactactagaata |
357 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2029312 |
ttgaatttagctctcatttactaattcttgcagagatatactactagaata |
2029362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 30919591 - 30919686
Alignment:
| Q |
11 |
tcgaatcctttacaaaactcaactaaaatacattcaaactagatacttttaactttaaaataactctaaaagtgacctaaaaatcatatatgatttc |
107 |
Q |
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||||||||||||||||| | |||||||||||||||||||||| ||| ||||||| |||||| | |||||| || ||||||| | ||||||||||| |
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| T |
30919591 |
tcgaatcctttacaaaaattaactaaaatacattcaaactagctac-tttaactctaaaatgatactaaaaaggagctaaaaaccctatatgatttc |
30919686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 30927272 - 30927373
Alignment:
| Q |
7 |
tttatcgaatcctttacaaaactcaactaaaatacattcaaactagatacttttaactttaaaataactctaaaagtgacctaaaaatcatatatgattt |
106 |
Q |
| |
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|||||| |||||||||||||||| |||||||| ||||||||||||| ||| ||||||| ||| || | ||||||| || ||||||| |||||||||| |
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| T |
30927272 |
tttatccaatcctttacaaaacttaactaaaaaacattcaaactagctac-tttaactctaatatgattctaaaaaggagctaaaaactctatatgattt |
30927370 |
T |
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| Q |
107 |
cct |
109 |
Q |
| |
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||| |
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|
| T |
30927371 |
cct |
30927373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 7784159 - 7784232
Alignment:
| Q |
7 |
tttatcgaatcctttacaaaactcaactaaaatacattcaaactagatacttttaactttaaaataactctaaaa |
81 |
Q |
| |
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||||||||||| |||||||||||||||||||||||| | ||||||| || ||||||| ||| || ||||||||| |
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| T |
7784159 |
tttatcgaatcatttacaaaactcaactaaaatacaatgaaactagccac-tttaactataatatgactctaaaa |
7784232 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 20014081 - 20014040
Alignment:
| Q |
7 |
tttatcgaatcctttacaaaactcaactaaaatacattcaaa |
48 |
Q |
| |
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||||||||||| |||| ||||||||| ||||||||||||||| |
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| T |
20014081 |
tttatcgaatcatttagaaaactcaattaaaatacattcaaa |
20014040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 11602415 - 11602316
Alignment:
| Q |
7 |
tttatcgaatcctttacaaaactcaactaaaatacattcaaactagatacttttaactttaaaataactctaaaagtgacctaaaaatcatatatgattt |
106 |
Q |
| |
|
||||||||||| ||| ||||||||||| |||||||| ||||||| | ||| ||||||| ||||||||||||| || || |||||| | |||||||||| |
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| T |
11602415 |
tttatcgaatcatttgcaaaactcaacaaaaatacaatcaaactcgctac-tttaactctaaaataactctacaaaggagctaaaagccctatatgattt |
11602317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 9934356 - 9934305
Alignment:
| Q |
7 |
tttatcgaatcctttacaaaactcaactaaaatacattcaaactagatactt |
58 |
Q |
| |
|
||||| ||| |||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
9934356 |
tttatggaaacctttagaaaactcaactaaaatacattcaaactagctactt |
9934305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 49683465 - 49683363
Alignment:
| Q |
13 |
gaatcctttacaaaactcaactaaaatacattcaaactagatacttttaactttaaaataactctaaaagtgacctaaaaatcatatatgatttcctttc |
112 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| | ||| || |||| |||||| ||| |||||| | ||||||| |||||| |||||||| || |
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| T |
49683465 |
gaatcctttacaaaactctactaaaatacaaataaacttgctac-ttgaactctaaaatgactttaaaaggggactaaaaaccatataagatttcctgtc |
49683367 |
T |
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| Q |
113 |
atca |
116 |
Q |
| |
|
|||| |
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|
| T |
49683366 |
atca |
49683363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 12554752 - 12554660
Alignment:
| Q |
13 |
gaatcctttacaaaactcaactaaaatacattcaaactagatacttttaactttaaaataactctaaaagtgacctaaaaatcatatatgattt |
106 |
Q |
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|||| |||||||||||| ||| |||||||||| ||||||| ||||||| |||||||| | ||||||||| || | ||||| | |||||||||| |
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| T |
12554752 |
gaattctttacaaaacttaacaaaaatacatttaaactagctactttt-actttaaattgactctaaaaaggaaccaaaaaccctatatgattt |
12554660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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