View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_low_28 (Length: 354)
Name: NF17941_low_28
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 45036665 - 45036340
Alignment:
| Q |
16 |
atcaccatagatcttaagtccaaaataatttacctacttagaacacaagttattagtcccttcgaaattcctcacttaatcaaagttattatttatatta |
115 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
45036665 |
atcaccatagatct-aagtccaaaataatttacctacttagaacacaagttattagtcccttcgaaattcctcacttagtcaaagttattatttttatta |
45036567 |
T |
|
| Q |
116 |
ggtaaaattaagttttggttttttcatctagaactagaaatgcaagtaacacgtcatatgtatggatctcaagtgtccacgtgtaagaaactaaccgact |
215 |
Q |
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||||||||||||||||||| |||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45036566 |
ggtaaaattaagttttggtatttttatctagaactagaaatacaagtgacacgtcatatgtatggatctcaagtgtccacgtgtaagaaactaaccgact |
45036467 |
T |
|
| Q |
216 |
cacaaattccacgtgtaaagaaacaatagcagaaataaatgattgatgacgtgtagaaataacagactacgaaaatagcatagtgtcctgtagagtgtac |
315 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45036466 |
cacaaattccacgtgtaaagaaacaataacagaaataaatgattgatgacgtgtagaaataacagactacgaaaatagcatagtgtcttgtagagtgtac |
45036367 |
T |
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| Q |
316 |
ctcccatatacggagtttggaataatt |
342 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
45036366 |
ctcccatatacggagtttggaataatt |
45036340 |
T |
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