View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_low_3 (Length: 613)
Name: NF17941_low_3
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 488; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 598
Target Start/End: Original strand, 5269599 - 5270208
Alignment:
| Q |
1 |
agtggagaagcataggtttatctaccttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaac |
100 |
Q |
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|||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5269599 |
agtggagaagaagagatttatctaccttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaat |
5269698 |
T |
|
| Q |
101 |
tttccagtttgggatttgatatgcaaagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaagaattggaacaagttttgctgaagt |
200 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
5269699 |
tttccagtgtgggatttgatatgcaaagatccttcacttgttaaggctgaaattcatggttggagtgatggagaagaattggaacaagttttgatgaatt |
5269798 |
T |
|
| Q |
201 |
tgattaacaaaatagtgatggaggaacatgttcagttcattgcatctgactgcaagatagctacaaactctatttgttcccgttcaccagtcattgccta |
300 |
Q |
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||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5269799 |
tgattaacaaaattatgatggaggaacatgttcaattcattgcatctgactgcaagctagctacaaactctatttgttcccgttcaccagtcattgccta |
5269898 |
T |
|
| Q |
301 |
aa-ttgggccttaaattcttagtttttgtgttagatgtttcttttat-----------taatgaagcagagaattcttgctttgaatatcaattttcgag |
388 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
5269899 |
aagttgggccttaaattcttagtttttgtgttagatgtttcttttatcagagtgtttgtattgaagcagagaattcttgctttgaatatcaattttcgag |
5269998 |
T |
|
| Q |
389 |
gaaatgctacaaatgatttttgaatgttcaagacaattttaaccatcactcttttgcatataacaaccttatattctaaacattgaatgtgaaaatatgt |
488 |
Q |
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| T |
5269999 |
gaaatgctacaaatgatttttgaatgttcaagacaattttaaccatcactcttttgcatataacaaccttatattctaaacattgaatgtgaaaacatgt |
5270098 |
T |
|
| Q |
489 |
ctctgaccagtattattataggtcgtagctaccaatgtttgtttgtttctagcttttgagatggtgttgtccaattgaagagcaattaaagagggtaacg |
588 |
Q |
| |
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|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5270099 |
ttctgaccattattattataggtcgttgctaccaatgtttgtttgtttctagcttttgagatggtgttgttcaattgaagagcaattaaagagggtaacg |
5270198 |
T |
|
| Q |
589 |
tcgttgttaa |
598 |
Q |
| |
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|||||||||| |
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| T |
5270199 |
tcgttgttaa |
5270208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 5276050 - 5275808
Alignment:
| Q |
14 |
aggtttatctaccttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaactttccagtttggg |
113 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
5276050 |
aggtttatctaccttggtgatggtgcaggggactattgccctagtttgaggcttagagaaagagactttgtgatgccaaggaagaattttccagtgtggg |
5275951 |
T |
|
| Q |
114 |
atttgatatgcaaagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaagaattggaacaagttttgctgaagttgattaacaaaat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
5275950 |
atttgatatgcaaagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaagaattggaacaagttttgatgaatttgattaacaaaat |
5275851 |
T |
|
| Q |
214 |
agtgatggaggaacatgttcagttcattgcatctgactgcaag |
256 |
Q |
| |
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||||||||||||||||||| || ||| |||| || |||||| |
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| T |
5275850 |
tatgatggaggaacatgttcaatttatttcatcagattgcaag |
5275808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 14 - 177
Target Start/End: Complemental strand, 5272061 - 5271898
Alignment:
| Q |
14 |
aggtttatctaccttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaactttccagtttggg |
113 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||||||| ||| ||| |||||||||||||||||||||||||| |||||||| |||| |
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| T |
5272061 |
aggtttatctaccttggtgatggtgctggagattattgccctagcttgaggtttaaagagagagactttgtgatgccaaggaagaattttccagtgtggg |
5271962 |
T |
|
| Q |
114 |
atttgatatgcaaagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaaga |
177 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||||||||||||||| ||||||||||||| |
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|
| T |
5271961 |
atttgatatgcaaagacccttcacttgttaaggctgaaattcatggttggtgtgatggagaaga |
5271898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 14 - 177
Target Start/End: Original strand, 5251768 - 5251931
Alignment:
| Q |
14 |
aggtttatctaccttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaactttccagtttggg |
113 |
Q |
| |
|
||||||||||||||||||||||| ||| || ||||| ||||| || ||||||||||| | ||| || |||||||||||||||| |||||||| |||| |
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| T |
5251768 |
aggtttatctaccttggtgatggcattggagattattgtcctagtttaaggcttagagagaaagatttcatgatgccaaggaagaattttccagtgtggg |
5251867 |
T |
|
| Q |
114 |
atttgatatgcaaagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaaga |
177 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||||||||||||||| ||||||||||||| |
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|
| T |
5251868 |
atttgatatgcaaagacccttcacttgttaaggctgaaattcatggttggtgtgatggagaaga |
5251931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 14945041 - 14945163
Alignment:
| Q |
17 |
tttatctaccttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaactttccagtttgggatt |
116 |
Q |
| |
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|||||||||| |||||||||| ||| |||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||| ||||| | |
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| T |
14945041 |
tttatctaccatggtgatggtattggagactattgccctagtttgagacttagagaaagagactttgttatgtcaaggaagaactttccagtatgggact |
14945140 |
T |
|
| Q |
117 |
tgatatgcaaagatccttcactt |
139 |
Q |
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||||||| ||||| |||| |||| |
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| T |
14945141 |
tgatatgaaaagaccctttactt |
14945163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 8e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 26314456 - 26314296
Alignment:
| Q |
17 |
tttatctaccttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaactttccagtttgggatt |
116 |
Q |
| |
|
|||||||| |||||||||||| ||| || ||||| || ||||| || |||| ||||| |||||||||||||||||||||||| ||||| || ||||| | |
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|
| T |
26314456 |
tttatctatcttggtgatggtagtggagattattgtccaagcttaagccttaaagaaaaagactttgtgatgccaaggaagaattttcctgtatgggact |
26314357 |
T |
|
| Q |
117 |
tgatatgcaaagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaaga |
177 |
Q |
| |
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||||||||||||||||||||||||| |||||| ||||| ||| ||||||||||||||||| |
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| T |
26314356 |
tgatatgcaaagatccttcacttgttaaagctaaaatttatgaatggagtgatggagaaga |
26314296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 14 - 177
Target Start/End: Complemental strand, 43109408 - 43109245
Alignment:
| Q |
14 |
aggtttatctaccttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaactttccagtttggg |
113 |
Q |
| |
|
||||||||||| ||||| |||||| ||| || ||||| || ||||||||||||| ||||| |||||||||||||||||||||||| ||||| || |||| |
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|
| T |
43109408 |
aggtttatctatcttggggatggtagtggagattattgtccaagcttgaggcttaaagaaaaagactttgtgatgccaaggaagaattttcctgtgtggg |
43109309 |
T |
|
| Q |
114 |
atttgatatgcaaagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaaga |
177 |
Q |
| |
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|||| || |||||||||||||||||||| |||||| ||||| ||| ||||||||||| ||||| |
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|
| T |
43109308 |
atttaatttgcaaagatccttcacttgttaaagctaaaatttatgaatggagtgatggtgaaga |
43109245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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