View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_low_31 (Length: 338)
Name: NF17941_low_31
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 9 - 321
Target Start/End: Complemental strand, 42272775 - 42272463
Alignment:
| Q |
9 |
cattattctctgatcaaagtcctcacctggcaaagaatggtagagaattagcatgcattaatactagaaggaaagttttaagcaaagtataaaatttcat |
108 |
Q |
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| T |
42272775 |
cattattctctgatcaaagtcctcacctggcaaagaatggtagagaattagcatgcattaatactagaaggaaagttttaagcaaagtataaaatttcat |
42272676 |
T |
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| Q |
109 |
aatttcataatattctttctattataagtactcacctccaagatgagtatctccgtttgtagcaagaacctcaaaaacaccgttatcaattgtcaagata |
208 |
Q |
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| T |
42272675 |
aatttcataatattctttctattataagtactcacctccaagatgagtatctccgtttgtagcaagaacctcaaaaacaccgttatcaattgtcaagata |
42272576 |
T |
|
| Q |
209 |
ctgacatcaaaagttccacctccaagatcaaagacgagaatgttcttctctccacctttcttgtccaatccataagcaatggcagcagcggtgggttcat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42272575 |
ctgacatcaaaagttccacctccaagatcaaagacgagaatgttcttctctccacctttcttgtccaatccataagcaatggcagcagcggtgggttcat |
42272476 |
T |
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| Q |
309 |
taatgattctagc |
321 |
Q |
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| T |
42272475 |
taatgattctagc |
42272463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 131 - 321
Target Start/End: Complemental strand, 42324776 - 42324586
Alignment:
| Q |
131 |
tataagtactcacctccaagatgagtatctccgtttgtagcaagaacctcaaaaacaccgttatcaattgtcaagatactgacatcaaaagttccacctc |
230 |
Q |
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| T |
42324776 |
tataagtactcacctccaagatgggtatctccatttgtagaaagaacctcaaaaacaccattgtcaattgtcaagatactgacatcaaaagttccacctc |
42324677 |
T |
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| Q |
231 |
caagatcaaagacgagaatgttcttctctccacctttcttgtccaatccataagcaatggcagcagcggtgggttcattaatgattctagc |
321 |
Q |
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| T |
42324676 |
caagatcaaagacaagaatgttcttctctccacctttcttgtccaatccataagcaatggcagcagcggtaggttcgttaatgattctagc |
42324586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 38
Target Start/End: Complemental strand, 42324894 - 42324865
Alignment:
| Q |
9 |
cattattctctgatcaaagtcctcacctgg |
38 |
Q |
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| T |
42324894 |
cattattctctgatcaaagtcctcacctgg |
42324865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 28220185 - 28220225
Alignment:
| Q |
269 |
ttgtccaatccataagcaatggcagcagcggtgggttcatt |
309 |
Q |
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| T |
28220185 |
ttgtccaatccatatgcaatagcagcagcagtgggttcatt |
28220225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 23587658 - 23587618
Alignment:
| Q |
278 |
ccataagcaatggcagcagcggtgggttcattaatgattct |
318 |
Q |
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| T |
23587658 |
ccataagcaatagcagcagcggtaggttcattaataattct |
23587618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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