View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_low_32 (Length: 334)
Name: NF17941_low_32
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 43408187 - 43407889
Alignment:
| Q |
18 |
atcacattcactagattctcttacacatgtatagcataaaaagcataggacagaacattttttgagtgctataaaaaccctgccacaccctcacttcaaa |
117 |
Q |
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| T |
43408187 |
atcacattcactagattctcttacacatgtatagcataaaaagcataggacagaacattttttgagtgctataaaaaccctgccacaccctcacttcaaa |
43408088 |
T |
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| Q |
118 |
atcatgtattttaattccaactacaacaactagttacacaacattgttcattcccttattttattctttctgtgtccattcagcttcttctaatcatcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43408087 |
atcatgtattttaattccaactacaacaactagttacacaacattgttcattcccttattttattctttctgtgtccattcagcttcttctaatcatcaa |
43407988 |
T |
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| Q |
218 |
tcatggacagaaacaattctcgcaggcaacttgctgcaatgaaacagtccctctttgatcaggtaggttccttaattgtcactttgctctcatttttctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43407987 |
tcatggacagaaacaattctcgcaggcaacttgctgcaatgaaacagtccctctttgatcaggtaggttccttaattgtcac-ttgctctcatttttctt |
43407889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 181 - 299
Target Start/End: Complemental strand, 43395799 - 43395678
Alignment:
| Q |
181 |
ttctttctgtgtccattcagcttcttct---aatcatcaatcatggacagaaacaattctcgcaggcaacttgctgcaatgaaacagtccctctttgatc |
277 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43395799 |
ttctttctgtgtcccttcagcttcttcttctaatcatcaatcatggacagaaacaattctcgcagacaacttgctgcaatgaaacagtccctctttgatc |
43395700 |
T |
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| Q |
278 |
aggtaggttccttaattgtcac |
299 |
Q |
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| T |
43395699 |
aagtaggttccttaattttcac |
43395678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 43395951 - 43395869
Alignment:
| Q |
19 |
tcacattcactagattctcttacacatgtatagcataaa----aagcataggacagaacattttttgagtgctataaaaaccct |
98 |
Q |
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||||| |||||||||||||| ||||| || |||||||| ||||||||||||| |||| ||||| |||||||||||||||| |
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| T |
43395951 |
tcacaatcactagattctctg-cacatatacagcataaataataagcataggacaggacatcttttgggtgctataaaaaccct |
43395869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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