View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17941_low_34 (Length: 327)
Name: NF17941_low_34
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_low_34 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 38 - 327
Target Start/End: Complemental strand, 2950433 - 2950144
Alignment:
| Q |
38 |
attgaatgatatatttctttttaccaatattcaatgatgttttagtacctgggtaattttttaagtataaacatgtaacttgcttgaatgaattcaatgt |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2950433 |
attgaatgatatatttctttttaccaatattcaatgatgttttagtacctgggtaattttttaagtataaacatgtaacttgcttgaatcaattcaatgt |
2950334 |
T |
|
| Q |
138 |
caataccattaattcatttgcataaatagagtatttcttgtgcaaaatatctttctaatatttaaaaatgctattttttatagacagttttgtagctttt |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2950333 |
caataccattaattcatttgcataaatagagtatttcttgtgcaaaatatctttctaaaatttaaaaatgctattttttatagacagttttgtagctttt |
2950234 |
T |
|
| Q |
238 |
gaaaggtcttattaataaagtataatgattaatatcattcataaatcttatgaatcaagggctataagattattcttgaatatggatatc |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2950233 |
gaaaggtcttattaataaagtataatgattaatatcattcataaatcttatgaatcaagggctataagattattcttgaatatggatatc |
2950144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 327
Target Start/End: Complemental strand, 2933665 - 2933505
Alignment:
| Q |
167 |
agtatttcttgtgcaaaatatctttctaatatttaaaaatgctatttttt-atagacagttttgtagcttttgaaaggtcttattaataaagtataatga |
265 |
Q |
| |
|
||||||||||||| ||||||| ||||| | ||||||| |||||||||||| ||||||||||||| ||||| || | ||| ||||| || | || ||| |
|
|
| T |
2933665 |
agtatttcttgtgaaaaatatatttctgaaatttaaacatgctattttttcgaagacagttttgtatattttgtaaagcctttttaatcaa-tttagtga |
2933567 |
T |
|
| Q |
266 |
ttaatatcattcataaatcttatgaatcaagggctataagattattcttgaatatggatatc |
327 |
Q |
| |
|
||| ||| ||||| || | ||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
2933566 |
ttagtataattcaagaagtatctgaatcaagggctgtaagattattcttgacaatggatatc |
2933505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University