View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_low_37 (Length: 291)
Name: NF17941_low_37
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 29762981 - 29762723
Alignment:
| Q |
18 |
gaacatacagctgagaaccaccttgagaaccatactgactcaggtgactaattgcagactgaaaagcctttgtattagatgtatttccatctccaacacc |
117 |
Q |
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| T |
29762981 |
gaacatacagctgagaaccaccttgagaaccatactgactcaggtgactaattgcagactgaaaagcctttgtattagatgtatttccatctccaacacc |
29762882 |
T |
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| Q |
118 |
accaaaatctgtcaatgaagcactatgtgctctacaatttataccattgtacacaaatgaagttgtcacaatttttgattttctactttcaactctttct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29762881 |
accaaaatctgtcaatgaagcactatgtgctctacaatttataccattgtacacaaatgaagttgtcacaatttttgcttttctactttcaactctttct |
29762782 |
T |
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| Q |
218 |
ggatacaccagtgtcaccacaaatattgctaaaaatatttgaatcatctgtaaagtata |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29762781 |
ggatacaccagtgtcaccacaaatattgctaaaaatatttgaatcatctgtaaaatata |
29762723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 34506091 - 34506144
Alignment:
| Q |
79 |
aaaagcctttgtattagatgtatttccatctccaacaccaccaaaatctgtcaa |
132 |
Q |
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| T |
34506091 |
aaaagcttttgtgttagaggtttttccatcaccaacaccaccaaaatctgtcaa |
34506144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 11065088 - 11065250
Alignment:
| Q |
18 |
gaacatacagctgagaaccaccttgagaaccatactgactcaggtgactaattgcagactgaaaagcctttgtattagatgtatttccatctccaacacc |
117 |
Q |
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| T |
11065088 |
gaacatacaattgagaccctccttcagaagcattctgactcaaatgacttattgcagatttaaaagcctttgtgtttgatgtttttccatctccaacacc |
11065187 |
T |
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| Q |
118 |
accaaaatctgtcaatgaagcactatgtgctctacaatttataccattgtacacaaatgaagt |
180 |
Q |
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||||||||| |||||||| |||||||||| |||||||||| | || ||||| |||| ||||| |
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| T |
11065188 |
accaaaatccttcaatgaaacactatgtgccctacaatttagagcactgtactcaaaagaagt |
11065250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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