View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17941_low_44 (Length: 250)
Name: NF17941_low_44
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_low_44 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 25355836 - 25356076
Alignment:
| Q |
1 |
tcttcagccaaaatatttttaccacagacttgacactgtagttattaaacatcaaagtcgataacaattcattttaaacaaagtgttgaactactaatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25355836 |
tcttcagccaaaatatttttaccacagacttgacactgtagttattaaacatcaaattagataacaattcattttaaacaaagtgttgaactactaatcc |
25355935 |
T |
|
| Q |
101 |
tatctaaccagctacaactatatcaagtagtnnnnnnnnnngtctacgtaaggcttactcttttttaagctcaatgaatacatttgcatttcaatcacat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25355936 |
tatctaaccagctacaactatatcaagtagt-aaaaaaaaagtctatgtaaggcttactcttttttaagctcaatgaatacatttgcatttcaatcacat |
25356034 |
T |
|
| Q |
201 |
gaattccagaacacaatatttgaacgattaggagttcatctc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25356035 |
gaattccagaacacaatatttgaacgattaggagttcatctc |
25356076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 39212055 - 39212023
Alignment:
| Q |
1 |
tcttcagccaaaatatttttaccacagacttga |
33 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
39212055 |
tcttcagccaaaatatttttgccacagacttga |
39212023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University