View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_low_47 (Length: 241)
Name: NF17941_low_47
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 25355637 - 25355429
Alignment:
| Q |
16 |
atgtaatcaaattcataggaatgtgcacttccacatgatgatcatgatcttcttctacatgatgaagatctgaactgtatcaagcctatgtattagatgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25355637 |
atgtaatcaaattcataggaatgtgcacttccacatgatgatcacgatcttcttctacatgatgaagatctgaactgtatcaagcctatgtattagatgt |
25355538 |
T |
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| Q |
116 |
tgcagttacgcatcattggatttctttgcaaggaaactcattggttttctttcaagtgatcatttcatatctaattacttgcgcagacctagactaacca |
215 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25355537 |
tgcagtcacgcatcattggatttctttgcaaggaaactcattggttttctttcaagtgatcatttcatatctaattacttgcgcagacctagactaacca |
25355438 |
T |
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| Q |
216 |
tgtctagat |
224 |
Q |
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||||||||| |
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| T |
25355437 |
tgtctagat |
25355429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 15762976 - 15763074
Alignment:
| Q |
126 |
catcattggatttctttgcaaggaaactcattggttttctttcaagtgatcatttcatatctaattacttgcgcagacctagactaaccatgtctagat |
224 |
Q |
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||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
15762976 |
catcattggatttctttgcaaggcaactcattgattttctttcaagtgatcatttcatatctaattacttgcgcagacctagactaaccatctctagat |
15763074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 1005441 - 1005318
Alignment:
| Q |
16 |
atgtaatcaaattcataggaatgtgcacttccacatgatgatcatgatcttcttctacatgatgaagatctgaactgtatcaagcctatgtattagatgt |
115 |
Q |
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|||| |||||||||||||||| ||||||||| |||||||||||| |||||| ||||| ||||||||||| |||| ||||||||||||||| |||||||| |
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| T |
1005441 |
atgtgatcaaattcataggaacgtgcacttctacatgatgatcaagatctttttctatatgatgaagatttgaaatgtatcaagcctatgcattagatgc |
1005342 |
T |
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| Q |
116 |
tgcagttacgcatcattggatttc |
139 |
Q |
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||||| ||||||||||||||||| |
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| T |
1005341 |
agcagtcacgcatcattggatttc |
1005318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 39212304 - 39212427
Alignment:
| Q |
16 |
atgtaatcaaattcataggaatgtgcacttccacatgatgatcatgatcttcttctacatgatgaagatctgaactgtatcaagcctatgtattagatgt |
115 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||| ||||||||||| |||| ||||||||||||||| |||||||| |
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| T |
39212304 |
atgtaatcaaattcataggaacgtgcacttctacatgatgatcaagatcttcttctatatgatgaagatttgaaatgtatcaagcctatgcattagatgc |
39212403 |
T |
|
| Q |
116 |
tgcagttacgcatcattggatttc |
139 |
Q |
| |
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||||| || | |||||||||||| |
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| T |
39212404 |
agcagtcacacgtcattggatttc |
39212427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 27508599 - 27508474
Alignment:
| Q |
16 |
atgtaatcaaattcataggaatgtgcacttccacatgatgatcatgatcttcttc--tacatgatgaagatctgaactgtatcaagcctatgtattagat |
113 |
Q |
| |
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||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| || ||||||||||| |||| ||||||||||||||| ||||||| |
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| T |
27508599 |
atgtaatcaaattcataggaacgtgcacttctacatgatgatcaagatcttcttctatatatgatgaagatttgaaatgtatcaagcctatgcattagat |
27508500 |
T |
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| Q |
114 |
gttgcagttacgcatcattggatttc |
139 |
Q |
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| ||||| ||||||||||||||||| |
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| T |
27508499 |
gcagcagtcacgcatcattggatttc |
27508474 |
T |
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