View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_low_48 (Length: 240)
Name: NF17941_low_48
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 20229271 - 20229048
Alignment:
| Q |
1 |
agcaacacagaatgaataaaacagaaaacagattttcacagtagctgaaatccataagggagattattggtatatgatcaaaagttgcacagtagctgaa |
100 |
Q |
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| T |
20229271 |
agcaacacaaaatgaataaaacagaaaacagattttcacggtagctgaaatccataagggagattattcgcatatgatcaaaagttgcacagtagcagaa |
20229172 |
T |
|
| Q |
101 |
agtaatttctgcattcctatttgttttgagattagatttgttcaaaggtcaatagcagaaggcatttagcaatcaacatcatagctaaaaatatacatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20229171 |
agtaatttctgcattcctatttgttttgagattacatttgttcaaaggtcaatagcagaaggcatttagcaatcaacatcatagctaaaaatatacatat |
20229072 |
T |
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| Q |
201 |
tcactccaattaaggggttaagtt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
20229071 |
tcactccaattaaggggttaagtt |
20229048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 20260994 - 20260888
Alignment:
| Q |
118 |
tatttgttttgagattagatttgttcaaaggtcaatagcagaaggcatttagcaatcaacatcatagctaaaaatatacatattcactccaattaagggg |
217 |
Q |
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| T |
20260994 |
tatttattttgagattagattggttcaaaggtcaatagcagaaggaattcagcaatgaacatcatagctaaaaatatacatattcactccaattaaggag |
20260895 |
T |
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| Q |
218 |
ttaagtt |
224 |
Q |
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||||||| |
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| T |
20260894 |
ttaagtt |
20260888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 20261854 - 20261769
Alignment:
| Q |
1 |
agcaacacagaatgaataaaacagaaaacagattttcacagtagctgaaatccataagggagattattggtatatgatcaaaagtt |
86 |
Q |
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| T |
20261854 |
agcaacacaaaatgaatacaacagaaaacagatatgcacagtagctaaaatccataagagagattattagtataggatcaaaagtt |
20261769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 20170532 - 20170580
Alignment:
| Q |
38 |
acagtagctgaaatccataagggagattattggtatatgatcaaaagtt |
86 |
Q |
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| T |
20170532 |
acagtagctgaaatccataaggaagatgagtagtatatgatcaacagtt |
20170580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 20172525 - 20172573
Alignment:
| Q |
38 |
acagtagctgaaatccataagggagattattggtatatgatcaaaagtt |
86 |
Q |
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| T |
20172525 |
acagtagctgaaatccataaggaagatgagtagtatatgatcaacagtt |
20172573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 20271423 - 20271343
Alignment:
| Q |
1 |
agcaacacagaatgaataaaacagaaaacagattttcacagtagctgaaatccataagggagattattggtatatgatcaa |
81 |
Q |
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||||| ||| ||||||||||||||| |||| || | |||||| | |||||| ||| |||||||||| | | |||||||||| |
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| T |
20271423 |
agcaaaacaaaatgaataaaacagagaacaaatatgcacagttggtgaaattcattagggagattaatagcatatgatcaa |
20271343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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