View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17941_low_49 (Length: 239)
Name: NF17941_low_49
Description: NF17941
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17941_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 42222526 - 42222306
Alignment:
| Q |
1 |
ttgcaccatgttttccattcactctaatcaaaacgttgcagtttatgtttgctatttgcgacgagcttagaagaggcaaactgtggtatttcttagcaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||| |
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| T |
42222526 |
ttgcaccatgttttccattcactctaatcaaaacgttgcagtttatgtttgctatttgcaacgggcttagaagaggcgaactgtggtatttcttagcaca |
42222427 |
T |
|
| Q |
101 |
tatttgcagttgaatgttttgcgatcaagattttgcactgtgttgctagctcacgctgtaggttgtgataggtgttatcaaggtcgtggtagcaacagac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42222426 |
tatttgcagttgaatgttttgcgatcaagattttgcactatattgctagctcacgctgtaggttgtgataggtgttatccaggtcgtggtagcaacagac |
42222327 |
T |
|
| Q |
201 |
acagtggtcttatggtggtag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
42222326 |
acagtggtcttatggtggtag |
42222306 |
T |
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